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Commit f706ace4 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Move note on aria2c

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README.md
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...@@ -27,7 +27,7 @@ Python dependencies available through `pip` are provided in `requirements.txt`. ...@@ -27,7 +27,7 @@ Python dependencies available through `pip` are provided in `requirements.txt`.
OpenFold depends on `openmm==7.5.1` and `pdbfixer`, which are only available OpenFold depends on `openmm==7.5.1` and `pdbfixer`, which are only available
via `conda`. For producing sequence alignments, you'll also need `jackhmmer`, via `conda`. For producing sequence alignments, you'll also need `jackhmmer`,
`kalign`, and the [HH-suite](https://github.com/soedinglab/hh-suite) installed `kalign`, and the [HH-suite](https://github.com/soedinglab/hh-suite) installed
on your system. on your system. Finally, some download scripts require `aria2c`.
For convenience, we provide a script that installs Miniconda locally, creates a For convenience, we provide a script that installs Miniconda locally, creates a
`conda` virtual environment, installs all Python dependencies, and downloads `conda` virtual environment, installs all Python dependencies, and downloads
...@@ -63,8 +63,6 @@ To download the genetic databases used by AlphaFold/OpenFold, run: ...@@ -63,8 +63,6 @@ To download the genetic databases used by AlphaFold/OpenFold, run:
scripts/download_all_data.sh data/ scripts/download_all_data.sh data/
``` ```
This script depends on `aria2c`.
### Inference ### Inference
To run inference on a sequence using a set of DeepMind's pretrained parameters, To run inference on a sequence using a set of DeepMind's pretrained parameters,
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