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Commit a46f1b12 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Revert changes to mmcif cache gen script

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README.md
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...@@ -181,7 +181,7 @@ files, we provide `scripts/data_dir_to_fasta.py`. ...@@ -181,7 +181,7 @@ files, we provide `scripts/data_dir_to_fasta.py`.
Next, generate a cache of certain datapoints in the mmCIF files: Next, generate a cache of certain datapoints in the mmCIF files:
```bash ```bash
python3 scripts/generate_prot_data_cache.py \ python3 scripts/generate_mmcif_cache.py \
mmcif_dir/ \ mmcif_dir/ \
mmcif_cache.json \ mmcif_cache.json \
--no_workers 16 --no_workers 16
......
scripts/generate_prot_data_cache.py → scripts/generate_mmcif_cache.py
View file @ a46f1b12
import argparse import argparse
from functools import partial from functools import partial
import json
import logging import logging
from multiprocessing import Pool from multiprocessing import Pool
import os import os
import sys import sys
import json
sys.path.append(".") # an innocent hack to get this to run from the top level sys.path.append(".") # an innocent hack to get this to run from the top level
from tqdm import tqdm from tqdm import tqdm
......
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