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Commit 57cb093e authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Update notebook

parent ceb1f087
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notebooks/OpenFold.ipynb
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...@@ -143,7 +143,7 @@ ...@@ -143,7 +143,7 @@
" with tqdm.notebook.tqdm(total=100, bar_format=TQDM_BAR_FORMAT) as pbar:\n", " with tqdm.notebook.tqdm(total=100, bar_format=TQDM_BAR_FORMAT) as pbar:\n",
" with io.capture_output() as captured:\n", " with io.capture_output() as captured:\n",
" %shell rm -rf openfold\n", " %shell rm -rf openfold\n",
" %shell git clone {GIT_REPO} openfold && cd openfold && git checkout 71189e && cd ..\n", " %shell git clone {GIT_REPO} openfold\n",
" pbar.update(8)\n", " pbar.update(8)\n",
" # Install the required versions of all dependencies.\n", " # Install the required versions of all dependencies.\n",
" %shell pip3 install -r ./openfold/requirements.txt\n", " %shell pip3 install -r ./openfold/requirements.txt\n",
...@@ -251,10 +251,10 @@ ...@@ -251,10 +251,10 @@
"import torch\n", "import torch\n",
"\n", "\n",
"from openfold import config\n", "from openfold import config\n",
"from openfold.features import feature_pipeline\n", "from openfold.data import feature_pipeline\n",
"from openfold.features import parsers\n", "from openfold.data import parsers\n",
"from openfold.features.np import data_pipeline\n", "from openfold.data import data_pipeline\n",
"from openfold.features.np import jackhmmer\n", "from openfold.data.tools import jackhmmer\n",
"from openfold.model import model\n", "from openfold.model import model\n",
"from openfold.np import protein\n", "from openfold.np import protein\n",
"from openfold.np.relax import relax\n", "from openfold.np.relax import relax\n",
......
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