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Commit 13f0f6fe authored by Jennifer Wei's avatar Jennifer Wei
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Adds libgcc and pytorch::pytorch to environment.yml

parent a5c69a79
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Showing with 5 additions and 3 deletions
environment.yml
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name: openfold_venv name: openfold-venv
channels: channels:
- conda-forge - conda-forge
- bioconda - bioconda
- pytorch
dependencies: dependencies:
- python=3.9 - python=3.9
- libgcc=7.2
- setuptools=59.5.0 - setuptools=59.5.0
- pip - pip
- openmm=7.7 - openmm=7.7
- pdbfixer - pdbfixer
- cudatoolkit==11.3.* - cudatoolkit==11.3.*
- pytorch=1.12.*
- pytorch-lightning==1.5.10 - pytorch-lightning==1.5.10
- biopython==1.79 - biopython==1.79
- numpy==1.21 - numpy==1.21
...@@ -27,8 +28,9 @@ dependencies: ...@@ -27,8 +28,9 @@ dependencies:
- bioconda::hmmer==3.3.2 - bioconda::hmmer==3.3.2
- bioconda::hhsuite==3.3.0 - bioconda::hhsuite==3.3.0
- bioconda::kalign2==2.04 - bioconda::kalign2==2.04
- pytorch::pytorch=1.12.*
- pip: - pip:
- deepspeed==0.5.10 - deepspeed==0.5.10
- dm-tree==0.1.6 - dm-tree==0.1.6
- git+https://github.com/NVIDIA/dllogger.git - git+https://github.com/NVIDIA/dllogger.git
- git+https://github.com/Dao-AILab/flash-attention.git@v0.2.1 - git+https://github.com/Dao-AILab/flash-attention.git@5b838a8
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