KubeflowMode.md 10.9 KB
Newer Older
Lee's avatar
Lee committed
1
2
**Run an Experiment on Kubeflow**
===
3
Now NNI supports running experiment on [Kubeflow](https://github.com/kubeflow/kubeflow), called kubeflow mode. Before starting to use NNI kubeflow mode, you should have a kubernetes cluster, either on-prem or [Azure Kubernetes Service(AKS)](https://azure.microsoft.com/en-us/services/kubernetes-service/), a Ubuntu machine on which [kubeconfig](https://kubernetes.io/docs/concepts/configuration/organize-cluster-access-kubeconfig/) is setup to connect to your kubernetes cluster. If you are not familiar with kubernetes, [here](https://kubernetes.io/docs/tutorials/kubernetes-basics/) is a good start. In kubeflow mode, your trial program will run as kubeflow job in kubernetes cluster. 
Lee's avatar
Lee committed
4
5
6
7

## Prerequisite for on-premises Kubernetes Service
1. A **Kubernetes** cluster using Kubernetes 1.8 or later. Follow this [guideline](https://kubernetes.io/docs/setup/) to set up Kubernetes
2. Download, set up, and deploy **Kubelow** to your Kubernetes cluster. Follow this [guideline](https://www.kubeflow.org/docs/started/getting-started/) to set up Kubeflow
8
3. Prepare a **kubeconfig** file, which will be used by NNI to interact with your kubernetes API server. By default, NNI manager will use $(HOME)/.kube/config as kubeconfig file's path. You can also specify other kubeconfig files by setting the **KUBECONFIG** environment variable. Refer this [guideline]( https://kubernetes.io/docs/concepts/configuration/organize-cluster-access-kubeconfig) to learn more about kubeconfig. 
Lee's avatar
Lee committed
9
4. If your NNI trial job needs GPU resource, you should follow this [guideline](https://github.com/NVIDIA/k8s-device-plugin) to configure **Nvidia device plugin for Kubernetes**.
10
5. Prepare a **NFS server** and export a general purpose mount (we recommend to map your NFS server path in `root_squash option`, otherwise permission issue may raise when nni copy files to NFS. Refer this [page](https://linux.die.net/man/5/exports) to learn what root_squash option is), or **Azure File Storage**. 
Lee's avatar
Lee committed
11
12
13
14
15
16
17
18
19
6. Install **NFS client** on the machine where you install NNI and run nnictl to create experiment. Run this command to install NFSv4 client:
    ```
    apt-get install nfs-common 
    ```     

7. Install **NNI**, follow the install guide [here](GetStarted.md).

## Prerequisite for Azure Kubernetes Service
1. NNI support kubeflow based on Azure Kubernetes Service, follow the [guideline](https://azure.microsoft.com/en-us/services/kubernetes-service/) to set up Azure Kubernetes Service.
20
2. Install [Azure CLI](https://docs.microsoft.com/en-us/cli/azure/install-azure-cli?view=azure-cli-latest) and __kubectl__.  Use `az login` to set azure account, and connect kubectl client to AKS, refer this [guideline](https://docs.microsoft.com/en-us/azure/aks/kubernetes-walkthrough#connect-to-the-cluster).
Lee's avatar
Lee committed
21
22
23
24
25
3. Deploy kubeflow on Azure Kubernetes Service, follow the [guideline](https://www.kubeflow.org/docs/started/getting-started/).
4. Follow the [guideline](https://docs.microsoft.com/en-us/azure/storage/common/storage-quickstart-create-account?tabs=portal) to create azure file storage account. If you use Azure Kubernetes Service, nni need Azure Storage Service to store code files and the output files.
5. To access Azure storage service, nni need the access key of the storage account, and nni use [Azure Key Vault](https://azure.microsoft.com/en-us/services/key-vault/) Service to protect your private key. Set up Azure Key Vault Service, add a secret to Key Vault to store the access key of Azure storage account. Follow this [guideline](https://docs.microsoft.com/en-us/azure/key-vault/quick-create-cli) to store the access key.

## Design 
26
27
28
29
![](./img/kubeflow_training_design.png)
Kubeflow training service instantiates a kubernetes rest client to interact with your K8s cluster's API server. 

For each trial, we will upload all the files in your local codeDir path (configured in nni_config.yaml) together with NNI generated files like parameter.cfg into a storage volumn. Right now we support two kinds of storage volumns: [nfs](https://en.wikipedia.org/wiki/Network_File_System) and [azure file storage](https://azure.microsoft.com/en-us/services/storage/files/), you should configure the storage volumn in nni config yaml file. After files are prepared, Kubeflow training service will call K8S rest API to create kubeflow jobs ([tf-operator](https://github.com/kubeflow/tf-operator) job or [pytorch-operator](https://github.com/kubeflow/pytorch-operator) job) in K8S, and mount your storage volumn into the job's pod. Output files of kubeflow job, like stdout, stderr, trial.log or model files, will also be copied back to the storage volumn. NNI will show the storage volumn's URL for each trial in WebUI, to allow user browse the log files and job's output files. 
Lee's avatar
Lee committed
30

31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
## Supported operator
NNI only support tf-operator and pytorch-operator of kubeflow, other operators is not tested.
Users could set operator type in config file.
The setting of tf-operator:
```
kubeflowConfig:
  operator: tf-operator
```
The setting of pytorch-operator:
```
kubeflowConfig:
  operator: pytorch-operator
```
If users want to use tf-operator, he could set `ps` and `worker` in trial config. If users want to use pytorch-operator, he could set `master` and `worker` in trial config. 

Chi Song's avatar
Chi Song committed
46
## Supported storage type
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
NNI support NFS and Azure Storage to store the code and output files, users could set storage type in config file and set the corresponding config.  
The setting for NFS storage are as follows:
```
kubeflowConfig:
  storage: nfs
  nfs:
    # Your NFS server IP, like 10.10.10.10
    server: {your_nfs_server_ip}
    # Your NFS server export path, like /var/nfs/nni
    path: {your_nfs_server_export_path}
```
If you use Azure storage, you should  set `kubeflowConfig` in your config yaml file as follows:
```
kubeflowConfig:
  storage: azureStorage
  keyVault:
    vaultName: {your_vault_name}
    name: {your_secert_name}
  azureStorage:
    accountName: {your_storage_account_name}
    azureShare: {your_azure_share_name}
```


Lee's avatar
Lee committed
71
## Run an experiment
72
Use `examples/trials/mnist` as an example. This is a tensorflow job, and use tf-operator of kubeflow. The nni config yaml file's content is like: 
Lee's avatar
Lee committed
73
```
74
authorName: default
Lee's avatar
Lee committed
75
experimentName: example_mnist
76
77
78
79
trialConcurrency: 2
maxExecDuration: 1h
maxTrialNum: 20
#choice: local, remote, pai, kubeflow
Lee's avatar
Lee committed
80
trainingServicePlatform: kubeflow
81
82
searchSpacePath: search_space.json
#choice: true, false
Lee's avatar
Lee committed
83
84
useAnnotation: false
tuner:
85
  #choice: TPE, Random, Anneal, Evolution
Lee's avatar
Lee committed
86
87
88
89
  builtinTunerName: TPE
  classArgs:
    #choice: maximize, minimize
    optimize_mode: maximize
90
91
92
93
94
assessor:
  builtinAssessorName: Medianstop
  classArgs:
    optimize_mode: maximize
  gpuNum: 0
Lee's avatar
Lee committed
95
trial:
96
97
98
99
100
  codeDir: .
  worker:
    replicas: 2
    command: python3 dist_mnist.py
    gpuNum: 1
Lee's avatar
Lee committed
101
102
    cpuNum: 1
    memoryMB: 8196
103
104
105
106
107
    image: msranni/nni:latest
  ps:
    replicas: 1
    command: python3 dist_mnist.py
    gpuNum: 0
Lee's avatar
Lee committed
108
109
    cpuNum: 1
    memoryMB: 8196
110
    image: msranni/nni:latest
Lee's avatar
Lee committed
111
112
kubeflowConfig:
  operator: tf-operator
113
  apiVersion: v1alpha2
Lee's avatar
Lee committed
114
115
  storage: nfs
  nfs:
116
117
118
119
    # Your NFS server IP, like 10.10.10.10
    server: {your_nfs_server_ip}
    # Your NFS server export path, like /var/nfs/nni
    path: {your_nfs_server_export_path}
Lee's avatar
Lee committed
120
```
121
122
123
124

Note: You should explicitly set `trainingServicePlatform: kubeflow` in nni config yaml file if you want to start experiment in kubeflow mode. 

If you want to run Pytorch jobs, you could set your config files as follow:
Lee's avatar
Lee committed
125
```
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
authorName: default
experimentName: example_mnist_distributed_pytorch
trialConcurrency: 1
maxExecDuration: 1h
maxTrialNum: 10
#choice: local, remote, pai, kubeflow
trainingServicePlatform: kubeflow
searchSpacePath: search_space.json
#choice: true, false
useAnnotation: false
tuner:
  #choice: TPE, Random, Anneal, Evolution
  builtinTunerName: TPE
  classArgs:
    #choice: maximize, minimize
    optimize_mode: minimize
trial:
  codeDir: .
  master:
    replicas: 1
    command: python3 dist_mnist.py
    gpuNum: 1
    cpuNum: 1
    memoryMB: 2048
    image: msranni/nni:latest
  worker:
    replicas: 1
    command: python3 dist_mnist.py
    gpuNum: 0
    cpuNum: 1
    memoryMB: 2048
    image: msranni/nni:latest
Lee's avatar
Lee committed
158
kubeflowConfig:
159
160
161
162
163
164
165
  operator: pytorch-operator
  apiVersion: v1alpha2
  nfs:
    # Your NFS server IP, like 10.10.10.10
    server: {your_nfs_server_ip}
    # Your NFS server export path, like /var/nfs/nni
    path: {your_nfs_server_export_path}
Lee's avatar
Lee committed
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
```

Trial configuration in kubeflow mode have the following configuration keys:
* codeDir
    * code directory, where you put training code and config files
* worker (required). This config section is used to configure tensorflow worker role
    * replicas
        * Required key. Should be positive number depends on how many replication your want to run for tensorflow worker role.
    * command
        * Required key. Command to launch your trial job, like ```python mnist.py```
    * memoryMB
        * Required key. Should be positive number based on your trial program's memory requirement
    * cpuNum
    * gpuNum
    * image
        * Required key. In kubeflow mode, your trial program will be scheduled by Kubernetes to run in [Pod](https://kubernetes.io/docs/concepts/workloads/pods/pod/). This key is used to specify the Docker image used to create the pod where your trail program will run. 
182
183
184
        * We already build a docker image [msranni/nni](https://hub.docker.com/r/msranni/nni/) on [Docker Hub](https://hub.docker.com/). It contains NNI python packages, Node modules and javascript artifact files required to start experiment, and all of NNI dependencies. The docker file used to build this image can be found at [here](../deployment/Dockerfile.build.base). You can either use this image directly in your config file, or build your own image based on it.
    * apiVersion
        * Required key. The API version of your kubeflow.
Lee's avatar
Lee committed
185
* ps (optional). This config section is used to configure tensorflow parameter server role.
186
* master(optional). This config section is used to configure pytorch parameter server role.
Lee's avatar
Lee committed
187
188
189
190
191

Once complete to fill nni experiment config file and save (for example, save as exp_kubeflow.yaml), then run the following command
```
nnictl create --config exp_kubeflow.yaml
```
192
to start the experiment in kubeflow mode. NNI will create Kubeflow tfjob or pytorchjob for each trial, and the job name format is something like `nni_exp_{experiment_id}_trial_{trial_id}`. 
Lee's avatar
Lee committed
193
194
195
196
197
198
199
You can see the kubeflow tfjob created by NNI in your Kubernetes dashboard. 

Notice: In kubeflow mode, NNIManager will start a rest server and listen on a port which is your NNI WebUI's port plus 1. For example, if your WebUI port is `8080`, the rest server will listen on `8081`, to receive metrics from trial job running in Kubernetes. So you should `enable 8081` TCP port in your firewall rule to allow incoming traffic. 

Once a trial job is completed, you can goto NNI WebUI's overview page (like http://localhost:8080/oview) to check trial's information. 

Any problems when using NNI in kubeflow mode, plesae create issues on [NNI github repo](https://github.com/Microsoft/nni), or send mail to nni@microsoft.com