WIP: main_retriver_merge

megatron/data/biencoder_dataset_utils.py

+import os
+import time
+
+import numpy as np
+import torch
+
+from megatron import mpu, print_rank_0
+from megatron.data.dataset_utils import create_masked_lm_predictions, pad_and_convert_to_numpy
+from megatron import get_args, get_tokenizer, print_rank_0, mpu
+
+
+def get_one_epoch_dataloader(dataset, micro_batch_size=None):
+    """Specifically one epoch to be used in an indexing job."""
+    args = get_args()
+
+    world_size = mpu.get_data_parallel_world_size()
+    rank = mpu.get_data_parallel_rank()
+    if micro_batch_size is None:
+        micro_batch_size = args.micro_batch_size
+    global_batch_size = micro_batch_size * world_size
+    num_workers = args.num_workers
+
+    sampler = torch.utils.data.SequentialSampler(dataset)
+    # importantly, drop_last must be False to get all the data.
+    assert False, 'DistributedBatchSampler deprecated, change the implementation'
+    from megatron.data.samplers import DistributedBatchSampler
+    batch_sampler = DistributedBatchSampler(sampler,
+                                            batch_size=global_batch_size,
+                                            drop_last=False,
+                                            rank=rank,
+                                            world_size=world_size)
+
+    return torch.utils.data.DataLoader(dataset,
+                                       batch_sampler=batch_sampler,
+                                       num_workers=num_workers,
+                                       pin_memory=True)
+
+
+def get_ict_batch(data_iterator):
+    # Items and their type.
+    keys = ['query_tokens', 'query_mask',
+            'context_tokens', 'context_mask', 'block_data']
+    datatype = torch.int64
+
+    # Broadcast data.
+    if data_iterator is None:
+        data = None
+    else:
+        data = next(data_iterator)
+    data_b = mpu.broadcast_data(keys, data, datatype)
+
+    # Unpack.
+    query_tokens = data_b['query_tokens'].long()
+    query_mask = data_b['query_mask'] < 0.5
+    context_tokens = data_b['context_tokens'].long()
+    context_mask = data_b['context_mask'] < 0.5
+    block_indices = data_b['block_data'].long()
+
+    return query_tokens, query_mask,\
+           context_tokens, context_mask, block_indices
+
+
+def join_str_list(str_list):
+    """Join a list of strings, handling spaces appropriately"""
+    result = ""
+    for s in str_list:
+        if s.startswith("##"):
+            result += s[2:]
+        else:
+            result += " " + s
+    return result
+
+
+class BlockSampleData(object):
+    """A struct for fully describing a fixed-size block of data as used in REALM
+
+    :param start_idx: for first sentence of the block
+    :param end_idx: for last sentence of the block (may be partially truncated in sample construction)
+    :param doc_idx: the index of the document from which the block comes in the original indexed dataset
+    :param block_idx: a unique integer identifier given to every block.
+    """
+    def __init__(self, start_idx, end_idx, doc_idx, block_idx):
+        self.start_idx = start_idx
+        self.end_idx = end_idx
+        self.doc_idx = doc_idx
+        self.block_idx = block_idx
+
+    def as_array(self):
+        return np.array([self.start_idx, self.end_idx, self.doc_idx, self.block_idx]).astype(np.int64)
+
+    def as_tuple(self):
+        return self.start_idx, self.end_idx, self.doc_idx, self.block_idx
+
+
+class BlockSamplesMapping(object):
+    def __init__(self, mapping_array):
+        # make sure that the array is compatible with BlockSampleData
+        assert mapping_array.shape[1] == 4
+        self.mapping_array = mapping_array
+
+    def __len__(self):
+        return self.mapping_array.shape[0]
+
+    def __getitem__(self, idx):
+        """Get the data associated with an indexed sample."""
+        sample_data = BlockSampleData(*self.mapping_array[idx])
+        return sample_data
+
+
+def get_block_samples_mapping(block_dataset, title_dataset, data_prefix, num_epochs,
+                              max_num_samples, max_seq_length, seed, name, use_one_sent_docs=False):
+    """Get samples mapping for a dataset over fixed size blocks. This function also requires
+    a dataset of the titles for the source documents since their lengths must be taken into account.
+
+    :return: samples_mapping (BlockSamplesMapping)
+    """
+
+    if not num_epochs:
+        if not max_num_samples:
+            raise ValueError("Need to specify either max_num_samples "
+                             "or num_epochs")
+        num_epochs = np.iinfo(np.int32).max - 1
+    if not max_num_samples:
+        max_num_samples = np.iinfo(np.int64).max - 1
+
+    # Filename of the index mapping
+    indexmap_filename = data_prefix
+    indexmap_filename += '_{}_indexmap'.format(name)
+    if num_epochs != (np.iinfo(np.int32).max - 1):
+        indexmap_filename += '_{}ep'.format(num_epochs)
+    if max_num_samples != (np.iinfo(np.int64).max - 1):
+        indexmap_filename += '_{}mns'.format(max_num_samples)
+    indexmap_filename += '_{}msl'.format(max_seq_length)
+    indexmap_filename += '_{}s'.format(seed)
+    if use_one_sent_docs:
+        indexmap_filename += '_1sentok'
+    indexmap_filename += '.npy'
+
+    # Build the indexed mapping if not exist.
+    if mpu.get_data_parallel_rank() == 0 and \
+            not os.path.isfile(indexmap_filename):
+        print(' > WARNING: could not find index map file {}, building '
+              'the indices on rank 0 ...'.format(indexmap_filename))
+
+        # Make sure the types match the helpers input types.
+        assert block_dataset.doc_idx.dtype == np.int64
+        assert block_dataset.sizes.dtype == np.int32
+
+        # Build samples mapping
+        verbose = torch.distributed.get_rank() == 0
+        start_time = time.time()
+        print_rank_0(' > building samples index mapping for {} ...'.format(
+            name))
+
+        # compile/bind the C++ helper code
+        from megatron.data.dataset_utils import compile_helper
+        compile_helper()
+
+        from megatron.data import helpers
+        mapping_array = helpers.build_blocks_mapping(
+            block_dataset.doc_idx,
+            block_dataset.sizes,
+            title_dataset.sizes,
+            num_epochs,
+            max_num_samples,
+            max_seq_length - 3,  # account for added tokens
+            seed,
+            verbose,
+            use_one_sent_docs)
+
+
+        print_rank_0(' > done building samples index mapping')
+        np.save(indexmap_filename, mapping_array, allow_pickle=True)
+        print_rank_0(' > saved the index mapping in {}'.format(
+            indexmap_filename))
+        # Make sure all the ranks have built the mapping
+        print_rank_0(' > elapsed time to build and save samples mapping '
+                     '(seconds): {:4f}'.format(
+            time.time() - start_time))
+
+    # This should be a barrier but nccl barrier assumes
+    # device_index=rank which is not the case for model
+    # parallel case
+    counts = torch.cuda.LongTensor([1])
+    torch.distributed.all_reduce(counts, group=mpu.get_data_parallel_group())
+    assert counts[0].item() == torch.distributed.get_world_size(
+        group=mpu.get_data_parallel_group())
+
+    # Load indexed dataset.
+    print_rank_0(' > loading indexed mapping from {}'.format(
+        indexmap_filename))
+    start_time = time.time()
+
+    mapping_array = np.load(indexmap_filename, allow_pickle=True, mmap_mode='r')
+    samples_mapping = BlockSamplesMapping(mapping_array)
+
+    print_rank_0('    loaded indexed file in {:3.3f} seconds'.format(
+        time.time() - start_time))
+    print_rank_0('    total number of samples: {}'.format(
+        mapping_array.shape[0]))
+
+    return samples_mapping

megatron/model/biencoder_model.py

+import os
+import torch
+import sys
+
+from megatron import get_args, print_rank_0
+from megatron.checkpointing import get_checkpoint_tracker_filename, get_checkpoint_name
+from megatron.module import MegatronModule
+from megatron import mpu, get_tokenizer
+from megatron.model.bert_model import bert_attention_mask_func
+from megatron.model.bert_model import bert_extended_attention_mask
+from megatron.model.bert_model import bert_position_ids
+from megatron.model.language_model import get_language_model
+from megatron.model.utils import get_linear_layer
+from megatron.model.utils import init_method_normal
+from megatron.model.utils import scaled_init_method_normal
+
+
+def biencoder_model_provider(only_query_model=False,
+                             only_context_model=False,
+                             shared_query_context_model=False):
+    """Build the model."""
+    args = get_args()
+
+    assert mpu.get_tensor_model_parallel_world_size() == 1 and \
+        mpu.get_pipeline_model_parallel_world_size() == 1, \
+        "Model parallel size > 1 not supported for ICT"
+
+    print_rank_0('building BiEncoderModel...')
+
+    # simpler to just keep using 2 tokentypes since 
+    # the LM we initialize with has 2 tokentypes
+    model = BiEncoderModel(
+        num_tokentypes=2,
+        parallel_output=True,
+        only_query_model=only_query_model,
+        only_context_model=only_context_model,
+        shared_query_context_model=shared_query_context_model)
+
+    return model
+
+
+class BiEncoderModel(MegatronModule):
+    """Bert-based module for Biencoder model."""
+
+    def __init__(self,
+                 num_tokentypes=1,
+                 parallel_output=True,
+                 only_query_model=False,
+                 only_context_model=False,
+                 shared_query_context_model=False):
+        super(BiEncoderModel, self).__init__()
+        args = get_args()
+
+        bert_kwargs = dict(
+            num_tokentypes=num_tokentypes,
+            parallel_output=parallel_output)
+
+        self.shared_query_context_model = shared_query_context_model
+        assert not (only_context_model and only_query_model)
+        self.use_context_model = not only_query_model
+        self.use_query_model = not only_context_model
+        self.projection_dim = args.projection_dim
+
+        if self.shared_query_context_model:
+            self.model = PretrainedBertModel(**bert_kwargs)
+            self._model_key = 'shared_model'
+            self.query_model, self.context_model = self.model, self.model
+        else:
+            if self.use_query_model:
+                # this model embeds (pseudo-)queries - Embed_input in the paper
+                self.query_model = PretrainedBertModel(**bert_kwargs)
+                self._query_key = 'query_model'
+
+            if self.use_context_model:
+                # this model embeds evidence blocks - Embed_doc in the paper
+                self.context_model = PretrainedBertModel(**bert_kwargs)
+                self._context_key = 'context_model'
+
+    def forward(self, query_tokens, query_attention_mask, query_types,
+                context_tokens, context_attention_mask, context_types):
+        """Run a forward pass for each of the models and 
+        return the respective embeddings."""
+
+        if self.use_query_model:
+            query_logits = self.embed_text(self.query_model,
+                                           query_tokens,
+                                           query_attention_mask,
+                                           query_types)
+        else:
+            raise ValueError("Cannot embed query without the query model.")
+        if self.use_context_model:
+            context_logits = self.embed_text(self.context_model,
+                                             context_tokens,
+                                             context_attention_mask,
+                                             context_types)
+        else:
+            raise ValueError("Cannot embed block without the block model.")
+        return query_logits, context_logits
+
+    @staticmethod
+    def embed_text(model, tokens, attention_mask, token_types):
+        """Embed a batch of tokens using the model"""
+        logits = model(tokens,
+                              attention_mask,
+                              token_types)
+        return logits
+
+    def state_dict_for_save_checkpoint(self, destination=None, \
+        prefix='', keep_vars=False):
+        """Save dict with state dicts of each of the models."""
+        state_dict_ = {}
+        if self.shared_query_context_model:
+            state_dict_[self._model_key] = \
+                self.model.state_dict_for_save_checkpoint(destination,
+                                                          prefix,
+                                                          keep_vars)
+        else:
+            if self.use_query_model:
+                state_dict_[self._query_key] = \
+                    self.query_model.state_dict_for_save_checkpoint(
+                        destination, prefix, keep_vars)
+
+            if self.use_context_model:
+                state_dict_[self._context_key] = \
+                    self.context_model.state_dict_for_save_checkpoint(
+                        destination, prefix, keep_vars)
+
+        return state_dict_
+
+    def load_state_dict(self, state_dict, strict=True):
+        """Load the state dicts of each of the models"""
+        if self.shared_query_context_model:
+            print_rank_0("Loading shared query-context model")
+            self.model.load_state_dict(state_dict[self._model_key], \
+                strict=strict)
+        else:
+            if self.use_query_model:
+                print_rank_0("Loading query model")
+                self.query_model.load_state_dict( \
+                    state_dict[self._query_key], strict=strict)
+
+            if self.use_context_model:
+                print_rank_0("Loading context model")
+                self.context_model.load_state_dict( \
+                    state_dict[self._context_key], strict=strict)
+
+    def init_state_dict_from_bert(self):
+        """Initialize the state from a pretrained BERT model 
+        on iteration zero of ICT pretraining"""
+        args = get_args()
+
+        if args.bert_load is None:
+            print_rank_0("bert-load argument is None")
+            return
+
+        tracker_filename = get_checkpoint_tracker_filename(args.bert_load)
+        if not os.path.isfile(tracker_filename):
+            raise FileNotFoundError("Could not find BERT checkpoint")
+        with open(tracker_filename, 'r') as f:
+            iteration = int(f.read().strip())
+            assert iteration > 0
+
+        #for param in self.query_model.language_model.parameters():
+        #    print(param.data)
+            #break
+            #sys.exit()
+
+        checkpoint_name = get_checkpoint_name(args.bert_load, iteration, False)
+        if mpu.get_data_parallel_rank() == 0:
+            print('global rank {} is loading BERT checkpoint {}'.format(
+                torch.distributed.get_rank(), checkpoint_name))
+
+        try:
+            state_dict = torch.load(checkpoint_name, map_location='cpu')
+        except BaseException:
+            raise ValueError("Could not load BERT checkpoint")
+
+        # load the LM state dict into each model
+        model_dict = state_dict['model']['language_model']
+
+        if self.shared_query_context_model:
+            self.model.language_model.load_state_dict(model_dict)
+        else:
+            if self.use_query_model:
+                self.query_model.language_model.load_state_dict(model_dict)
+                # give each model the same ict_head to begin with as well
+                if self.projection_dim > 0:
+                    query_proj_state_dict = \
+                        self.state_dict_for_save_checkpoint()\
+                        [self._query_key]['projection_enc']
+            if self.use_context_model:
+                self.context_model.language_model.load_state_dict(model_dict)
+                if self.query_model is not None and self.projection_dim > 0:
+                    self.context_model.projection_enc.load_state_dict\
+                        (query_proj_state_dict)
+        #for param in self.query_model.language_model.parameters():
+        #    print(param.data)
+        #    #sys.exit()
+
+
+
+class PretrainedBertModel(MegatronModule):
+    """BERT-based encoder for queries or contexts used for 
+    learned information retrieval."""
+
+    def __init__(self, num_tokentypes=2, 
+            parallel_output=True):
+        super(PretrainedBertModel, self).__init__()
+
+        args = get_args()
+        tokenizer = get_tokenizer()
+        self.pad_id = tokenizer.pad
+        self.pool_type = args.pool_type
+        self.projection_dim = args.projection_dim
+        self.parallel_output = parallel_output
+        init_method = init_method_normal(args.init_method_std)
+        scaled_init_method = scaled_init_method_normal(
+            args.init_method_std, args.num_layers)
+
+        self.language_model, self._language_model_key = get_language_model(
+            attention_mask_func=bert_attention_mask_func,
+            num_tokentypes=num_tokentypes,
+            add_pooler=False,
+            init_method=init_method,
+            scaled_init_method=scaled_init_method)
+
+        if args.projection_dim > 0:
+            self.projection_enc = get_linear_layer(args.hidden_size,
+                                                   args.projection_dim,
+                                                   init_method)
+            self._projection_enc_key = 'projection_enc'
+
+    def forward(self, input_ids, attention_mask, tokentype_ids=None):
+        extended_attention_mask = attention_mask.unsqueeze(1)
+        #extended_attention_mask = bert_extended_attention_mask(attention_mask)
+        position_ids = bert_position_ids(input_ids)
+
+
+        lm_output = self.language_model(input_ids,
+                                        position_ids,
+                                        extended_attention_mask,
+                                        tokentype_ids=tokentype_ids)
+        # This mask will be used in average-pooling and max-pooling
+        pool_mask = (input_ids == self.pad_id).unsqueeze(2)
+        
+         # Taking the representation of the [CLS] token of BERT
+        if self.pool_type == "cls-token":
+            pooled_output = lm_output[:, 0, :]
+        elif self.pool_type == "avg":    # Average Pooling
+            pooled_output = lm_output.masked_fill(pool_mask, 0)
+            pooled_output = pooled_output.sum(1) / (pool_mask.size(1) \
+                - pool_mask.float().sum(1))
+        elif self.pool_type == "max":    # Max-Pooling
+            pooled_output = lm_output.masked_fill(pool_mask, -1000)
+            pooled_output = torch.max(pooled_output, 1)[0]
+
+        # Converting to float16 dtype
+        pooled_output = pooled_output.to(lm_output.dtype)
+        
+        # Output.
+        if self.projection_dim:
+            pooled_output = self.projection_enc(pooled_output)
+
+        return pooled_output
+
+    def state_dict_for_save_checkpoint(self, destination=None, prefix='',
+                                       keep_vars=False):
+        """For easy load when model is combined with other heads,
+        add an extra key."""
+
+        state_dict_ = {}
+        state_dict_[self._language_model_key] \
+            = self.language_model.state_dict_for_save_checkpoint(
+            destination, prefix, keep_vars)
+
+        if self.projection_dim > 0:
+            state_dict_[self._projection_enc_key] = \
+                self.projection_enc.state_dict(destination, prefix, keep_vars)
+
+        return state_dict_
+
+    def load_state_dict(self, state_dict, strict=True):
+        """Customized load."""
+        print_rank_0("loading BERT weights")
+        self.language_model.load_state_dict(
+            state_dict[self._language_model_key], strict=strict)
+
+        if self.projection_dim > 0:
+            print_rank_0("loading projection head weights")
+            self.projection_enc.load_state_dict(
+                state_dict[self._projection_enc_key], strict=strict)