GitLab

* support multimer datapipiline

* module for multimer

* support inference multimer

* add geometry

* delete unuseful code

* delete debug print

* add faster extraMSA and templateStack

* add license

* [ray] use ray for DB queries

* patched openmm

* add test exec script

* remove output before exec

* [tools] add coverage param to HHBlits

* [tools] add more param options to HHSearch

* [tools] remove ray from JackHmmer runner

* [tools] add comment for cov param in hhblits

* [tools] cleanup all debug code

* [tools] restore original files
Co-authored-by: shenggan <csg19971016@gmail.com>

Added data workflow for fastfold

sync with openfold 591d10d

add openmm patch and readme

add inference pipeline from openfold/alphafold

use colossalai as distributed core

fix mask softmax and support inference for arbitrary length sequences

add inject_openfold

fix minor bug in gather

refactor kernel implementation