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OpenDAS
FastFold
Commits
259b6c87
"tools/git@developer.sourcefind.cn:OpenDAS/nni.git" did not exist on "704b50e24a69eddea0aa94d3371d6773ccb48cb8"
Unverified
Commit
259b6c87
authored
Apr 26, 2022
by
shenggan
Committed by
GitHub
Apr 26, 2022
Browse files
fix overflow for softmax kernel (#20)
parent
92e6cf49
Changes
2
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Showing
2 changed files
with
38 additions
and
38 deletions
+38
-38
fastfold/model/fastnn/kernel/cuda_native/csrc/softmax_cuda.cpp
...old/model/fastnn/kernel/cuda_native/csrc/softmax_cuda.cpp
+7
-7
fastfold/model/fastnn/kernel/cuda_native/csrc/softmax_cuda_kernel.cu
...del/fastnn/kernel/cuda_native/csrc/softmax_cuda_kernel.cu
+31
-31
No files found.
fastfold/model/fastnn/kernel/cuda_native/csrc/softmax_cuda.cpp
View file @
259b6c87
#include <torch/extension.h>
at
::
Tensor
softmax
(
at
::
Tensor
input
,
int
rows
,
int
cols
);
at
::
Tensor
softmax_gradient
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
int
rows
,
int
cols
);
at
::
Tensor
softmax
(
at
::
Tensor
input
,
long
long
rows
,
long
long
cols
);
at
::
Tensor
softmax_gradient
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
long
long
rows
,
long
long
cols
);
at
::
Tensor
fused_scale_mask_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
int
rows
,
int
cols
,
at
::
Tensor
fused_scale_mask_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
long
long
rows
,
long
long
cols
,
float
scale
);
at
::
Tensor
fused_scale_mask_softmax_backward
(
at
::
Tensor
d_output
,
at
::
Tensor
input
,
at
::
Tensor
mask
,
int
rows
,
int
cols
,
float
scale
);
long
long
rows
,
long
long
cols
,
float
scale
);
at
::
Tensor
fused_scale_mask_bias_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
at
::
Tensor
bias
,
int
rows
,
int
cols
,
float
scale
);
long
long
rows
,
long
long
cols
,
float
scale
);
at
::
Tensor
fused_scale_mask_bias_softmax_backward
(
at
::
Tensor
d_output
,
at
::
Tensor
input
,
at
::
Tensor
mask
,
at
::
Tensor
bias
,
int
rows
,
int
cols
,
float
scale
);
at
::
Tensor
mask
,
at
::
Tensor
bias
,
long
long
rows
,
long
long
cols
,
float
scale
);
PYBIND11_MODULE
(
TORCH_EXTENSION_NAME
,
m
)
{
m
.
def
(
"forward"
,
&
softmax
,
"Softmax forward (CUDA)"
);
...
...
fastfold/model/fastnn/kernel/cuda_native/csrc/softmax_cuda_kernel.cu
View file @
259b6c87
...
...
@@ -30,10 +30,10 @@ __inline__ __device__ float WarpAllReduceSum(float val) {
////////////////
__global__
void
fastfold_softmax_fp32
(
float
*
input
,
float
*
output
,
int
rows
,
int
cols
)
{
__global__
void
fastfold_softmax_fp32
(
float
*
input
,
float
*
output
,
long
long
rows
,
long
long
cols
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -83,11 +83,11 @@ __global__ void fastfold_softmax_fp32(float *input, float *output, int rows, int
}
}
__global__
void
fastfold_softmax_bfp16
(
at
::
BFloat16
*
input
,
at
::
BFloat16
*
output
,
int
rows
,
int
cols
)
{
__global__
void
fastfold_softmax_bfp16
(
at
::
BFloat16
*
input
,
at
::
BFloat16
*
output
,
long
long
rows
,
long
long
cols
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -139,11 +139,11 @@ __global__ void fastfold_softmax_bfp16(at::BFloat16 *input, at::BFloat16 *output
}
}
__global__
void
fastfold_softmax_grad_fp32
(
float
*
d_output
,
float
*
output
,
float
*
d_input
,
int
rows
,
int
cols
)
{
__global__
void
fastfold_softmax_grad_fp32
(
float
*
d_output
,
float
*
output
,
float
*
d_input
,
long
long
rows
,
long
long
cols
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -191,10 +191,10 @@ __global__ void fastfold_softmax_grad_fp32(float *d_output, float *output, float
}
__global__
void
fastfold_softmax_grad_bfp16
(
at
::
BFloat16
*
d_output
,
at
::
BFloat16
*
output
,
at
::
BFloat16
*
d_input
,
int
rows
,
int
cols
)
{
at
::
BFloat16
*
d_input
,
long
long
rows
,
long
long
cols
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -242,7 +242,7 @@ __global__ void fastfold_softmax_grad_bfp16(at::BFloat16 *d_output, at::BFloat16
}
}
at
::
Tensor
softmax
(
at
::
Tensor
input
,
int
rows
,
int
cols
)
{
at
::
Tensor
softmax
(
at
::
Tensor
input
,
long
long
rows
,
long
long
cols
)
{
CHECK_INPUT
(
input
);
const
at
::
cuda
::
OptionalCUDAGuard
device_guard
(
device_of
(
input
));
...
...
@@ -262,7 +262,7 @@ at::Tensor softmax(at::Tensor input, int rows, int cols) {
return
output
;
}
at
::
Tensor
softmax_gradient
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
int
rows
,
int
cols
)
{
at
::
Tensor
softmax_gradient
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
long
long
rows
,
long
long
cols
)
{
CHECK_INPUT
(
output
);
const
at
::
cuda
::
OptionalCUDAGuard
device_guard
(
device_of
(
output
));
at
::
Tensor
grad_input
=
at
::
empty_like
(
output
);
...
...
@@ -285,11 +285,11 @@ at::Tensor softmax_gradient(at::Tensor d_output, at::Tensor output, int rows, in
////////////////
__global__
void
fastfold_softmax_scale_mask_fp32
(
float
*
input
,
float
*
mask
,
float
*
output
,
int
rows
,
int
cols
,
float
scale
,
int
head
)
{
__global__
void
fastfold_softmax_scale_mask_fp32
(
float
*
input
,
float
*
mask
,
float
*
output
,
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -344,11 +344,11 @@ __global__ void fastfold_softmax_scale_mask_fp32(float *input, float *mask, floa
}
__global__
void
fastfold_softmax_scale_mask_bfp16
(
at
::
BFloat16
*
input
,
at
::
BFloat16
*
mask
,
at
::
BFloat16
*
output
,
int
rows
,
int
cols
,
at
::
BFloat16
*
output
,
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -403,7 +403,7 @@ __global__ void fastfold_softmax_scale_mask_bfp16(at::BFloat16 *input, at::BFloa
}
}
at
::
Tensor
fused_scale_mask_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
int
rows
,
int
cols
,
at
::
Tensor
fused_scale_mask_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
long
long
rows
,
long
long
cols
,
float
scale
)
{
CHECK_INPUT
(
input
);
CHECK_INPUT
(
mask
);
...
...
@@ -428,11 +428,11 @@ at::Tensor fused_scale_mask_softmax_forward(at::Tensor input, at::Tensor mask, i
}
__global__
void
fastfold_softmax_scale_mask_grad_fp32
(
float
*
d_output
,
float
*
output
,
float
*
d_input
,
float
*
mask
,
int
rows
,
int
cols
,
float
scale
,
int
head
)
{
float
*
d_input
,
float
*
mask
,
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -487,10 +487,10 @@ __global__ void fastfold_softmax_scale_mask_grad_fp32(float *d_output, float *ou
__global__
void
fastfold_softmax_scale_mask_grad_bfp16
(
at
::
BFloat16
*
d_output
,
at
::
BFloat16
*
output
,
at
::
BFloat16
*
d_input
,
at
::
BFloat16
*
mask
,
int
rows
,
int
cols
,
float
scale
,
int
head
)
{
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -544,7 +544,7 @@ __global__ void fastfold_softmax_scale_mask_grad_bfp16(at::BFloat16 *d_output, a
}
at
::
Tensor
fused_scale_mask_softmax_backward
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
at
::
Tensor
mask
,
int
rows
,
int
cols
,
float
scale
)
{
at
::
Tensor
mask
,
long
long
rows
,
long
long
cols
,
float
scale
)
{
CHECK_INPUT
(
output
);
CHECK_INPUT
(
mask
);
const
at
::
cuda
::
OptionalCUDAGuard
device_guard
(
device_of
(
mask
));
...
...
@@ -571,11 +571,11 @@ at::Tensor fused_scale_mask_softmax_backward(at::Tensor d_output, at::Tensor out
////////////////
__global__
void
fastfold_softmax_scale_mask_bias_fp32
(
float
*
input
,
float
*
mask
,
float
*
bias
,
float
*
output
,
int
rows
,
int
cols
,
float
*
output
,
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -633,10 +633,10 @@ __global__ void fastfold_softmax_scale_mask_bias_fp32(float *input, float *mask,
__global__
void
fastfold_softmax_scale_mask_bias_bfp16
(
at
::
BFloat16
*
input
,
at
::
BFloat16
*
mask
,
at
::
BFloat16
*
bias
,
at
::
BFloat16
*
output
,
int
rows
,
int
cols
,
float
scale
,
int
head
)
{
long
long
rows
,
long
long
cols
,
float
scale
,
int
head
)
{
int
threadidx_x
=
threadIdx
.
x
/
32
;
int
threadidx_y
=
threadIdx
.
x
%
32
;
int
row_offset
=
blockIdx
.
x
*
4
+
threadidx_x
;
long
long
row_offset
=
(
long
long
)
blockIdx
.
x
*
4
+
threadidx_x
;
int
cols_per_thread
=
(
cols
+
31
)
/
32
;
int
cols_this_thread
=
cols_per_thread
;
...
...
@@ -694,7 +694,7 @@ __global__ void fastfold_softmax_scale_mask_bias_bfp16(at::BFloat16 *input, at::
}
at
::
Tensor
fused_scale_mask_bias_softmax_forward
(
at
::
Tensor
input
,
at
::
Tensor
mask
,
at
::
Tensor
bias
,
int
rows
,
int
cols
,
float
scale
)
{
long
long
rows
,
long
long
cols
,
float
scale
)
{
CHECK_INPUT
(
input
);
CHECK_INPUT
(
mask
);
CHECK_INPUT
(
bias
);
...
...
@@ -720,8 +720,8 @@ at::Tensor fused_scale_mask_bias_softmax_forward(at::Tensor input, at::Tensor ma
}
at
::
Tensor
fused_scale_mask_bias_softmax_backward
(
at
::
Tensor
d_output
,
at
::
Tensor
output
,
at
::
Tensor
mask
,
at
::
Tensor
bias
,
int
rows
,
int
cols
,
float
scale
)
{
at
::
Tensor
mask
,
at
::
Tensor
bias
,
long
long
rows
,
long
long
cols
,
float
scale
)
{
CHECK_INPUT
(
output
);
CHECK_INPUT
(
mask
);
const
at
::
cuda
::
OptionalCUDAGuard
device_guard
(
device_of
(
mask
));
...
...
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