README.md 7.52 KB
Newer Older
anton's avatar
anton committed
1
# Fast Discounted Cumulative Sums in PyTorch
Anton Obukhov's avatar
Anton Obukhov committed
2

anton's avatar
anton committed
3
4
5
[![PyPiVersion](https://badge.fury.io/py/torch-discounted-cumsum.svg)](https://pypi.org/project/torch-discounted-cumsum/)
![PythonVersion](https://img.shields.io/badge/python-%3E%3D3.6-yellowgreen)
[![PyPiDownloads](https://pepy.tech/badge/torch-discounted-cumsum)](https://pepy.tech/project/torch-discounted-cumsum)
anton's avatar
anton committed
6
7
8
9
[![License](https://img.shields.io/badge/License(code)-BSD%203--Clause-blue.svg)](LICENSE_code)
[![License: CC BY 4.0](https://img.shields.io/badge/License(doc)-CC%20BY%204.0-lightgrey.svg)](LICENSE_doc)

<img src="doc/img/logo_small.png" align="left">
anton's avatar
anton committed
10
11

This repository implements an efficient parallel algorithm for the computation of discounted cumulative sums 
Anton Obukhov's avatar
Anton Obukhov committed
12
13
and a Python package with differentiable bindings to PyTorch. The discounted `cumsum` operation is frequently seen in 
data science domains concerned with time series, including Reinforcement Learning (RL). 
anton's avatar
anton committed
14
15
16
17

The traditional sequential algorithm performs the computation of the output elements in a loop. For an input of size 
`N`, it requires `O(N)` operations and takes `O(N)` time steps to complete. 

Anton Obukhov's avatar
Anton Obukhov committed
18
The proposed parallel algorithm requires a total of `O(N log N)` operations, but takes only `O(log N)` time steps, which is a 
anton's avatar
anton committed
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
considerable trade-off in many applications involving large inputs.  

Features of the parallel algorithm:
- Speed logarithmic in the input size
- Better numerical precision than sequential algorithms

Features of the package:
- CPU: sequential algorithm in C++
- GPU: parallel algorithm in CUDA
- Gradients computation wrt input
- Both left and right directions of summation supported
- PyTorch bindings

## Usage

#### Installation

```shell script
pip install torch-discounted-cumsum
```

#### API

- `discounted_cumsum_right`: Computes discounted cumulative sums to the right of each position (a standard setting in RL)
- `discounted_cumsum_left`: Computes discounted cumulative sums to the left of each position

#### Example

```python
import torch
from torch_discounted_cumsum import discounted_cumsum_right

N = 8
gamma = 0.99
x = torch.ones(1, N).cuda()
y = discounted_cumsum_right(x, gamma)

print(y)
```

Output:
```
tensor([[7.7255, 6.7935, 5.8520, 4.9010, 3.9404, 2.9701, 1.9900, 1.0000]],
       device='cuda:0')
```

#### Up to `K` elements

```python
import torch
from torch_discounted_cumsum import discounted_cumsum_right

N = 8
K = 2
gamma = 0.99
x = torch.ones(1, N).cuda()
Anton Obukhov's avatar
Anton Obukhov committed
75
76
y_N = discounted_cumsum_right(x, gamma)
y_K = y_N - (gamma ** K) * torch.cat((y_N[:, K:], torch.zeros(1, K).cuda()), dim=1)   
anton's avatar
anton committed
77
78
79
80
81
82
83
84
85
86
87
88
89
90

print(y_K)
```

Output:
```
tensor([[1.9900, 1.9900, 1.9900, 1.9900, 1.9900, 1.9900, 1.9900, 1.0000]],
       device='cuda:0')
```


## Parallel Algorithm

For the sake of simplicity, the algorithm is explained for `N=16`. 
Anton Obukhov's avatar
Anton Obukhov committed
91
92
93
The processing is performed in-place in the input vector in `log2 N` stages. Each stage updates `N / 2` positions in parallel 
(that is, in a single time step, provided unrestricted parallelism). A stage is characterized by the size of the group of 
sequential elements being updated, which is computed as `2 ^ (stage - 1)`. 
anton's avatar
anton committed
94
The group stride is always twice larger than the group size. The elements updated during the stage are highlighted with 
Anton Obukhov's avatar
Anton Obukhov committed
95
96
the respective stage color in the figure below. Here input elements are denoted with their position id in hex, and the 
elements tagged with two symbols indicate the range over which the discounted partial sum is computed upon stage completion.
anton's avatar
anton committed
97
98
99

Each element update includes an in-place addition of a discounted element, which follows the last 
updated element in the group. The discount factor is computed as gamma raised to the power of the distance between the 
Anton Obukhov's avatar
Anton Obukhov committed
100
101
updated and the discounted elements. In the figure below, this operation is denoted with tilted arrows with a greek 
gamma tag. After the last stage completes, the output is written in place of the input. 
anton's avatar
anton committed
102

anton's avatar
anton committed
103
104
105
<p align="center">
<img src="doc/img/algorithm.png">
</p>
anton's avatar
anton committed
106
107
108
109
110
111
112
113
114
115
116
117
118

In the CUDA implementation, `N / 2` CUDA threads are allocated during each stage to update the respective elements. The 
strict separation of updates into stages via separate kernel invocations guarantees stage-level synchronization and 
global consistency of updates.

The gradients wrt input can be obtained from the gradients wrt output by simply taking `cumsum` operation with the 
reversed direction of summation.

## Numerical Precision

The parallel algorithm produces a more numerically-stable output than the sequential algorithm using the same scalar 
data type.

Anton Obukhov's avatar
Anton Obukhov committed
119
The comparison is performed between 3 runs with identical inputs ([code](tests/test.py#L116)). The first run casts inputs to 
anton's avatar
anton committed
120
121
122
123
124
125
126
127
128
129
double precision and obtains the output reference using the sequential algorithm. Next, we run both sequential and 
parallel algorithms with the same inputs cast to single precision and compare the results to the reference. The 
comparison is performed using the `L_inf` norm, which is just the maximum of per-element discrepancies.

With 10000-element non-zero-centered input (such as all elements are 1.0), the errors of the algorithms are 2.8e-4 
(sequential) and 9.9e-5 (parallel). With zero-centered inputs (such as standard gaussian noise), the errors are 
1.8e-5 (sequential) and 1.5e-5 (parallel).      

## Speed-up

Anton Obukhov's avatar
Anton Obukhov committed
130
131
132
133
We tested 3 implementations of the algorithm with the same 100000-element input ([code](tests/test.py#L154)): 
1. Sequential in PyTorch on CPU (as in 
[REINFORCE](https://github.com/pytorch/examples/blob/87d9a1e/reinforcement_learning/reinforce.py#L66-L68)) (Intel Xeon CPU, DGX-1)
2. Sequential in C++ on CPU (Intel Xeon CPU, DGX-1)
anton's avatar
anton committed
134
135
136
137
138
139
140
3. Parallel in CUDA (NVIDIA P-100, DGX-1)

The observed speed-ups are as follows: 
- PyTorch to C++: 387 times
- PyTorch to CUDA: 36573 times
- C++ to CUDA: 94 times

anton's avatar
anton committed
141
## Ops-Space-Time Complexity
anton's avatar
anton committed
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
  
Assumptions:
- A fused operation of raising `gamma` to a power, multiplying the result by `x`, and adding `y` is counted as a 
single fused operation;
- `N` is a power of two. When it isn't, the parallel algorithm's complexity is the same as with N equal to the next 
power of two. 

Under these assumptions, the sequential algorithm takes `N` operations and `N` time steps to complete. 
The parallel algorithm takes `0.5 * N * log2 N` operations and can be completed in `log2 N` time steps
if the parallelism is unrestricted. 

Both algorithms can be performed in-place; hence their space complexity is `O(1)`.

## In Other Frameworks

#### PyTorch

As of the time of writing, PyTorch does not provide discounted `cumsum` functionality via the API. PyTorch RL code 
samples (e.g., [REINFORCE](https://github.com/pytorch/examples/blob/87d9a1e/reinforcement_learning/reinforce.py#L66-L68)) 
suggest computing returns in a loop over reward items. Since most RL algorithms do not require differentiating through 
returns, many code samples resort to using SciPy function listed below.

#### TensorFlow

TensorFlow API provides `tf.scan` API, which can be supplied with an appropriate lambda function implementing the 
formula above. Under the hood, however, `tf.scan` implement the traditional sequential algorithm.
 
#### SciPy

SciPy provides a `scipy.signal.lfilter` function for computing IIR filter response using the sequential algorithm, which 
can be used for the task at hand, as suggested in this [StackOverflow](https://stackoverflow.com/a/47971187/411907) 
response.

## Citation

To cite this repository, use the following BibTeX:

```
@misc{obukhov2021torchdiscountedcumsum,
    author = {Anton Obukhov},
    year = 2021,
    title = {Fast discounted cumulative sums in PyTorch},
    url = {www.github.com/toshas/torch-discounted-cumsum}
}
```