Commits · e9440acb06e1ab7a9d2f6f888a092b115da3155c · OpenDAS / dgl

30 Mar, 2020 4 commits
- [TF] TF backend fix and new logic to choose backend (#1393) · e9440acb
  Jinjing Zhou authored Mar 30, 2020
```
* TF backend fix and new logic to choose backend

* fix

* fix

* fix

* fix

* fix backend

* fix

* dlpack alignment

* add flag

* flag

* lint

* lint

* remove unused

* several fixes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  e9440acb
- [Sampler] Change argument type of fanout from list to dict (#1403) · 4b4186f8
  Quan (Andy) Gan authored Mar 30, 2020
  
  4b4186f8
- [BUG] fix crash in neighbor sampling w/ replacement on 0 degree nodes (#1402) · 97b08fbb
  Quan (Andy) Gan authored Mar 30, 2020
  
  97b08fbb
- add an optional include_dst_in_src argument (#1401) · e3a9a6bb
  Quan (Andy) Gan authored Mar 30, 2020
  
  e3a9a6bb
29 Mar, 2020 1 commit

[Feature] Support nn modules for bipartite graphs. (#1392) · af61e2fb

Zihao Ye authored Mar 29, 2020



* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

af61e2fb

28 Mar, 2020 1 commit

[Feature] Deprecate multigraph (#1389) · 67cb7a43

xiang song(charlie.song) authored Mar 28, 2020



* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

67cb7a43

27 Mar, 2020 2 commits

[NN] Add HeteroGraphConv module for cleaner module definition (#1385) · 3efb5d8e

Minjie Wang authored Mar 27, 2020

* Add HeteroGraphConv

* add custom aggregator; some docstring

* debugging

* rm print

* fix some acc bugs

* fix initialization problem in weight basis

* passed tests

* lint

* fix graphconv flag; add error message

* add mxnet heteroconv

* more fix for mx

* lint

* fix torch cuda test

* fix mx test_nn

* add exhaust test for graphconv

* add tf heteroconv

* fix comment

3efb5d8e

[Feature] Casting between DGLGraph and DGLHeteroGraph (#1391) · bbfff8ce

Quan (Andy) Gan authored Mar 27, 2020



* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

bbfff8ce

26 Mar, 2020 1 commit
- [CI] Tensorflow ci (#1397) · ebda932d
  Jinjing Zhou authored Mar 27, 2020
```
* fix

* fix
```
  ebda932d
25 Mar, 2020 2 commits
- [MXNet] Patch mxnet unittest (#1395) · 1e27e90e
  Jinjing Zhou authored Mar 26, 2020
```
* patch

* turn off tf test

* skip test

* fix
```
  1e27e90e
- [Doc] Fix link to backends docs (#1376) · 08fcda32
  Adam J. Stewart authored Mar 25, 2020
```
Co-authored-by: Tong He <hetong007@gmail.com>
```
  08fcda32
23 Mar, 2020 1 commit
- [BUG] Another fix on remove edges when all edges are removed (#1386) · b9c65e91
  Quan (Andy) Gan authored Mar 23, 2020
```
* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet
```
  b9c65e91
22 Mar, 2020 5 commits

[BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) · d27b4859
Quan (Andy) Gan authored Mar 22, 2020

d27b4859

[BUGFIX] don’t import dgl in the package. (#1382) · a0721405

Da Zheng authored Mar 22, 2020



* fix dgl data.

* remove more.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

a0721405

[BUGFIX] Fix is_multigraph in the construction from scipy coo matrix (#1357) · 10253a5c

Da Zheng authored Mar 22, 2020

* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.

10253a5c

Update README · 856de790
Minjie Wang authored Mar 22, 2020
```
Update README with both latest and stable doc links
```
856de790

[Doc] Patch tutorial (#1380) · 2cdc4d3c

Minjie Wang authored Mar 22, 2020

* patched 1_first

* done 2_basics

* done 4_batch

* done 1_gcn, 9_gat, 2_capsule

* 4_rgcn.py

* revert

* more fix

2cdc4d3c

20 Mar, 2020 1 commit
- [Hetero] Replace card with num_nodes · 0f40c6e4
  Mufei Li authored Mar 20, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  0f40c6e4
19 Mar, 2020 2 commits
- [KG]Update README and config (#1375) · 1b9bc16b
  xiang song(charlie.song) authored Mar 19, 2020
```
* Update README and config

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal>
```
  1b9bc16b
- [Bug] Multiple fixes (#1374) · 4af02022
  Quan (Andy) Gan authored Mar 19, 2020
```
* multiple fixes

* lint

* lint x2
```
  4af02022
18 Mar, 2020 1 commit
- [Bug] Fix dsttype in GraphSAGE minibatch model (#1371) · 0a51dc54
  Quan (Andy) Gan authored Mar 18, 2020
```
* fix for new ntype API for blocks

* adding two new interfaces
```
  0a51dc54
17 Mar, 2020 2 commits

[DGL-KE] Add license to every file header (#1368) · 635dfb4a

Chao Ma authored Mar 17, 2020

* update metis

* update

* update dataloader

* update dataloader

* new script

* update

* update

* update

* update

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* update

* update dataloader

* update

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* update

* update

* update

* update

* update

* Add license to every filer header

635dfb4a

[DGL-KE] Add METIS preprocessing pipeline (#1365) · f8ae6350

Chao Ma authored Mar 17, 2020

* update metis

* update

* update dataloader

* update dataloader

* new script

* update

* update

* update

* update

* update

* update

* update

* update dataloader

* update

* update

* update

* update

* update

f8ae6350

16 Mar, 2020 3 commits

Update (#1366) · 2ce0e21b
Mufei Li authored Mar 16, 2020

2ce0e21b
Update instructions for building from source (#1363) · 16627575
Mufei Li authored Mar 16, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
16627575

[Model] RGCN mini-batch training; Better bipartite graph support (#1337) · 6111ea46

Minjie Wang authored Mar 16, 2020

* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore

6111ea46

15 Mar, 2020 4 commits
- Update README.md · 9120ee60
  Minjie Wang authored Mar 15, 2020
  
  9120ee60
- [Model][Perf] Improve sage sampling performance (#1364) · d876680a
  Minjie Wang authored Mar 15, 2020
```
* improve speed

* fix bugs

* upd reg test
```
  d876680a
- fix. (#1358) · f9ad1c80
  Da Zheng authored Mar 14, 2020
```
Co-authored-by: Chao Ma <mctt90@gmail.com>
```
  f9ad1c80
- [KG] partition a KG. (#1351) · eb71c804
  Da Zheng authored Mar 14, 2020
```
* partition a KG.

* get tid.

* support builtin

* fix a minor bug.
Co-authored-by: Chao Ma <mctt90@gmail.com>
```
  eb71c804
14 Mar, 2020 1 commit

[DGL-LifeSci] WLN for Reaction Center Prediction (#1360) · 545cc065

Mufei Li authored Mar 14, 2020

* Update

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545cc065

13 Mar, 2020 3 commits

[Optimization] Optimize performance of COOSort (#1349) · 5a1ef70f

xiang song(charlie.song) authored Mar 13, 2020



* Fix coo_sort

* Add COOSort test

* Fix

* omp

* coo2csr can benefit from sorted coo

* Add more test code

* Add LIBCXX_ENABLE_PARALLEL_ALGORITHMS to Makefile

* upd

* Turn off LIBCXX_ENABLE_PARALLEL_ALGORITHMS by default
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

5a1ef70f

Update (#1359) · f3b866f4
Mufei Li authored Mar 13, 2020

f3b866f4

[Feature] Filtered MRR metrics for R-GCN example (#1298) · 6c7c4039

hgalioulline authored Mar 13, 2020



* Add filtered metrics for R-GCN example

* Add new line to end of file

* Add evaluation protocol argument option for R-GCN example

* Update README
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

6c7c4039

12 Mar, 2020 2 commits
- Fix for dataloader (#1353) · 87842db4
  xiang song(charlie.song) authored Mar 12, 2020
  
  87842db4
- [BUGFIX] metis partition should generate a subgraph to the original graph. (#1352) · 3938b399
  Da Zheng authored Mar 11, 2020
```
* fix a partition.

* add comments.
```
  3938b399
11 Mar, 2020 2 commits

[Feature] Improve the speed of to_bidirected (#1327) · 1a584ced

Da Zheng authored Mar 10, 2020

* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.

1a584ced

fix sampler. (#1350) · 9432cd63
Da Zheng authored Mar 10, 2020

9432cd63

10 Mar, 2020 2 commits
- [DOC] Improve the docstring of GATConv and new APIs (#1339) · 988c8b20
  Zihao Ye authored Mar 11, 2020
```
* upd

* upd

* upd

* upd

* upd
```
  988c8b20
- [KG] make batch size compatible with neg sample size (#1343) · e6584043
  Da Zheng authored Mar 10, 2020
```
* adjust batch size.

* fix for eval.py

* adjust parameters in distributed training.

* move code.
```
  e6584043