Commits · d57ff78da11193fbbee7f37a69fcfe1c14da2ae4 · OpenDAS / dgl

"test/git@developer.sourcefind.cn:change/sglang.git" did not exist on "b045841baeff37a5601fcde23fa98bd09d942c36"

25 Dec, 2019 1 commit

[Small Fix] Change default message queue size of communicator to 2GB (#1140) · d57ff78d

Chao Ma authored Dec 25, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

d57ff78d

24 Dec, 2019 1 commit

[KVStore] API change of kvstore (#1058) · e4ef8d1a

Chao Ma authored Dec 24, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

e4ef8d1a

23 Dec, 2019 1 commit
- [Doc] Hotfix for README (#1119) · 2ab4d0e1
  Mufei Li authored Dec 23, 2019
  
  2ab4d0e1
19 Dec, 2019 1 commit

[Chem] ACNN and various utilities (#1117) · cf9ba90f

Mufei Li authored Dec 19, 2019

* Add several splitting methods

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Finally

* CI

cf9ba90f

14 Dec, 2019 2 commits
- Fixed the training file (#1109) · 2448751c
  naveen marri authored Dec 14, 2019
  
  2448751c
- [Example] GCMC in PyTorch (#1101) · d16fb3ff
  Zihao Ye authored Dec 14, 2019
```
* upd

* fix

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd
```
  d16fb3ff
05 Dec, 2019 1 commit
- [Chem Model Zoo] Hot fix for README (#1071) · bc4f4352
  Mufei Li authored Dec 05, 2019
```
* Fix outdated example

* Hot fix
```
  bc4f4352
04 Dec, 2019 1 commit

[Example] add graphwriter pytorch example (#1068) · fff3dd95

Guo Qipeng authored Dec 05, 2019

* upd

* fig edgebatch edges

* add test

* trigger

* add graphwriter pytorch example

* fix line break in graphwriter README

* upd

* fix

fff3dd95

30 Nov, 2019 1 commit
- [Hotfix] Fix GAT example and clarify the usage of early stop (#1065) · fdc58a89
  Zihao Ye authored Nov 30, 2019
```
* upd

* rm redundancy:

* upd
```
  fdc58a89
26 Nov, 2019 2 commits

fix minor error: GCNLayerSAGE->GraphSAGELayer (#1010) · dca2580b
shizhediao authored Nov 27, 2019
```
fix minor error: GCNLayerSAGE->GraphSAGELayer
```
dca2580b

[Example] Finish adaptive sampling (#998) · 85c9ff01

xuyou314 authored Nov 25, 2019

* [Example] Finish adaptive sampling

* refactor code and use argparse for command-line usage

* Update README.md

* add node_per_layer command-line argument

85c9ff01

13 Nov, 2019 1 commit
- Make print of GCN example of mxnet and pytorch exact same. (#994) · 1915fdb9
  xiang song(charlie.song) authored Nov 13, 2019
  
  1915fdb9
08 Nov, 2019 1 commit
- Small change for kvstore api (#981) · a0193fd5
  Chao Ma authored Nov 08, 2019
```
* Small change for kvstore api

* fix ci

* fix ci
```
  a0193fd5
05 Nov, 2019 1 commit
- add init api on kvserver (#975) · 7897fa3b
  Chao Ma authored Nov 05, 2019
  
  7897fa3b
04 Nov, 2019 2 commits
- [kvstore] Performance improvement for distributed kvstore (#972) · cccde032
  Chao Ma authored Nov 04, 2019
```
* Performance improvment for distributed kvstore

* update

* update
```
  cccde032
- hotfix (#971) · fdd0fe65
  Zihao Ye authored Nov 04, 2019
  
  fdd0fe65
03 Nov, 2019 1 commit

[NN] nn modules & examples update (#890) · 9a0511c8

Zihao Ye authored Nov 04, 2019

* upd

* damn it

* fuck

* fuck pylint

* fudge

* remove some comments about MXNet

* upd

* upd

* damn it

* damn it

* fuck

* fuck

* upd

* upd

* pylint bastard

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

9a0511c8

30 Oct, 2019 1 commit

[Bug Fix] Fix package reliability bug of networkx (#949) · 82499e60

xiang song(charlie.song) authored Oct 30, 2019

* upd

* fig edgebatch edges

* add test

* trigger

* Update README.md for pytorch PinSage example.

Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.

* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.

1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
    test/pytorch/test_nn.py work on both CPU and GPU

* Fix style

* Delete unused code

* Make agnostic test only related to tests/backend

1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu

* Fix code style

* fix

* doc

* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.

* Fix syntex

* Remove rand

* Add TAGCN nn.module and example

* Now tagcn can run on CPU.

* Add unitest for TGConv

* Fix style

* For pubmed dataset, using --lr=0.005 can achieve better acc

* Fix style

* Fix some descriptions

* trigger

* Fix doc

* Add nn.TGConv and example

* Fix bug

* Update data in mxnet.tagcn test acc.

* Fix some comments and code

* delete useless code

* Fix namming

* Fix bug

* Fix bug

* Add test for mxnet TAGCov

* Add test code for mxnet TAGCov

* Update some docs

* Fix some code

* Update docs dgl.nn.mxnet

* Update weight init

* Fix

* reproduce the bug

* Fix concurrency bug reported at #755.
Also make test_shared_mem_store.py more deterministic.

* Update test_shared_mem_store.py

* Update dmlc/core

* networkx >= 2.4 will break our examples

* Update tutorials/requirements

* fix selfloop edges

* upd version

82499e60

29 Oct, 2019 2 commits
- [Cleanup] Change Byte to Bool for training masks (#954) · 98c1448b
  Jacob Stevens authored Oct 29, 2019
```
* Change Byte to Bool for training masks

* Check if module has Bool, otherwise use Byte
```
  98c1448b
- [Misc] Update README(s) (#962) · 86cf154b
  Mufei Li authored Oct 29, 2019
```
* Update

* Update
```
  86cf154b
26 Oct, 2019 1 commit
- [Model] Clean up for Cluster GCN (#940) · 421b05e7
  Mufei Li authored Oct 26, 2019
```
* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix
```
  421b05e7
25 Oct, 2019 1 commit
- [Model Zoo] AttentiveFP (#955) · 52c7ef49
  Mufei Li authored Oct 26, 2019
```
* Update

* Fix style

* Update

* Update

* Fix

* Update

* Update
```
  52c7ef49
21 Oct, 2019 4 commits
- [Model Zoo] Refactor and Add Utils for Chemistry (#928) · 577cf2e6
  Mufei Li authored Oct 22, 2019
```
* Refactor

* Add note

* Update

* CI
```
  577cf2e6
- Send any shape of tensor rather than matrix (#942) · ff9f67ee
  Chao Ma authored Oct 21, 2019
  
  ff9f67ee
- [Dataset] Migration for Chemistry Datasets (#926) · ae3102d3
  Mufei Li authored Oct 21, 2019
```
* Update

* Update
```
  ae3102d3
- [Model] Gated Graph Neural Network for bAbI tasks (#880) · c37076df
  Xiagkun Hu authored Oct 21, 2019
```
* rrn model and sudoku

* add README

* refine the code, add doc strings

* add sudoku solver

* add example for sudoku_solver

* ggnn example

* Rewrite README file

* fix typos
```
  c37076df
30 Sep, 2019 1 commit

[Dataset] Add CoraFull, Amazon, KarateClub, Coauthor Dataset (#855) · 9c790b11

VoVAllen authored Oct 01, 2019

* convert np.ndarray to backend tensor

* add datasets

* add qm7

* add dataset

* add dataset

* fix

* change ppi

* tu dataset

* add datasets

* fix

* fix

* fix

* fix

* add docstring

* docs

* doc

9c790b11

29 Sep, 2019 1 commit

[Hetero][Model] RGCN for heterogeneous input (#885) · 1c91f460

Minjie Wang authored Sep 29, 2019

* new hetero RGCN

* bgs running

* fix gpu

* am dataset

* fix bug in label preparation

* Fix AM training; add result

* rm sym link

* new embed layer; mutag

* mutag matched; other fix

* minor fix

* dataset refactor

* new data loading

* rm old files

* refactor

* docstring

* include literal nodes in AIFB dataset

* address comments

* docstring

1c91f460

28 Sep, 2019 1 commit

[Model] Add Pytorch example for Cluster GCN (#877) · 51a73504

Zardinality authored Sep 27, 2019

* initial commit of cluster GCN

* update readme

* fix small bugs running ppi

* nearly sota ppi training script&update readme

* rm unused imports&add shebang line to scripts

* minor comments&readme appended

* add rnd seed control&update readme

51a73504

27 Sep, 2019 1 commit

[Model][Hetero] HAN (#868) · c03046a0

Mufei Li authored Sep 27, 2019

* Add HAN

* Fix

* WIP; load raw ACM dataset

* DGL's own preprocessing with metapath coalescer

* various fixes

* comparison against simple logistic regression

* rename

* fix test

c03046a0

26 Sep, 2019 1 commit

[Sampler] Metapath sampler for metapath2vec (#861) · e3921d5d

Quan (Andy) Gan authored Sep 27, 2019

* metapath sampler

* lint & fixes

* lint x2

* lint x3

* fix windows

* remove max_cycle argument

* add todo note

e3921d5d

11 Sep, 2019 1 commit
- [KVStore] Distributed kvstore (#851) · 77822769
  Chao Ma authored Sep 11, 2019
```
* update

* speedup

* add some comments
```
  77822769
10 Sep, 2019 1 commit
- [Model Zoo] Fix JTNN (#843) · 9df8cd32
  Mufei Li authored Sep 10, 2019
```
* Update

* Update

* Update

* Update

* Update
```
  9df8cd32
07 Sep, 2019 1 commit

[Model Zoo] Refactor Model Zoo for Chemistry (#839) · 189c2c09

Mufei Li authored Sep 07, 2019

* Update

* Update

* Update

* Update fix

* Update

* Update

* Refactor

* Update

* Update

* Update

* Update

* Update

* Update

* Fix style

189c2c09

05 Sep, 2019 1 commit
- [docfix] Update the README of metapath2vec (#832) · 5b417683
  Zihao Ye authored Sep 05, 2019
```
* upd

* fig edgebatch edges

* add test

* trigger

* upd
```
  5b417683
03 Sep, 2019 1 commit
- [Example] Fix GIN Example (#826) · 87310503
  VoVAllen authored Sep 03, 2019
```
* Add serialization

* fix gin

* Add serialization

* fix gin

* fix
```
  87310503
02 Sep, 2019 1 commit

[Example] metapath2vec (#764) · ddeb86f9

ziqiaomeng authored Sep 02, 2019

* Prepare for metapath sampler

This file is just for reviewing metapath sampling algorithm (Python version).

* Delete metapath_sampler

* Prepare for metapath sampler

This file is just for reviewing metapath sampling algorithm (Python code).

* Add files via upload

* Create metapath2vec.md

* Add files via upload

* Delete data_handler.py

* Delete word2vec.py

* Delete word_train.py

* Add files via upload

Metapath2vec implementations. Metapath2vec++ needs negative sampler optimization.

* Delete shuffle_training.py

* Delete test.py

* Add files via upload

* Delete sampler.py

* Delete metapath_sampler.md

* Add files via upload

* Update and rename shuffle_training.py to metapath2vec.py

* Update reading_data.py

* Update metapath2vec.md

* Update metapath2vec.md

* Update metapath2vec.md

* Update metapath2vec.md

* Update metapath2vec.md

* Create label 2

* Delete label 2

* Create testing.md

* Add files via upload

* Create sample.md

* Add files via upload

* Delete sampler.py

* Add files via upload

* Delete googlescholar.8area.author.label.txt

* Delete googlescholar.8area.venue.label.txt

* Delete testing.md

* Delete id_author.txt

* Delete id_conf.txt

* Delete paper.txt

* Delete paper_author.txt

* Delete paper_conf.txt

* Delete sample.md

* Delete sampler.py

* Add files via upload

* Add files via upload

* Add files via upload

* Delete reading_data.py

* Add files via upload

* Add files via upload

* Delete metapath2vec.py

* Add files via upload

* Rename shuffle_training.py to metapath2vec.py

* Update metapath2vec.md

* Delete reading_data.py

* add comments and remov e commented codes

ddeb86f9

31 Aug, 2019 1 commit
- Hot fix (#816) · a9a0592c
  Mufei Li authored Sep 01, 2019
  
  a9a0592c
28 Aug, 2019 2 commits

Fix (#806) · 1b5820a5
Mufei Li authored Aug 29, 2019

1b5820a5

[NN] Add MXNet impl for TAGCN module. (#799) · e17add56

xiang song(charlie.song) authored Aug 28, 2019

* upd

* fig edgebatch edges

* add test

* trigger

* Update README.md for pytorch PinSage example.

Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.

* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.

1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
    test/pytorch/test_nn.py work on both CPU and GPU

* Fix style

* Delete unused code

* Make agnostic test only related to tests/backend

1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu

* Fix code style

* fix

* doc

* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.

* Fix syntex

* Remove rand

* Add TAGCN nn.module and example

* Now tagcn can run on CPU.

* Add unitest for TGConv

* Fix style

* For pubmed dataset, using --lr=0.005 can achieve better acc

* Fix style

* Fix some descriptions

* trigger

* Fix doc

* Add nn.TGConv and example

* Fix bug

* Update data in mxnet.tagcn test acc.

* Fix some comments and code

* delete useless code

* Fix namming

* Fix bug

* Fix bug

* Add test code for mxnet TAGCov

* Update some docs

* Fix some code

* Update docs dgl.nn.mxnet

* Update weight init

* Fix

e17add56