Commits · d27b4859127f4a45afd52fea70b1b5bc60d1affd · OpenDAS / dgl

22 Mar, 2020 5 commits

[BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) · d27b4859
Quan (Andy) Gan authored Mar 22, 2020

d27b4859

[BUGFIX] don’t import dgl in the package. (#1382) · a0721405

Da Zheng authored Mar 22, 2020



* fix dgl data.

* remove more.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

a0721405

[BUGFIX] Fix is_multigraph in the construction from scipy coo matrix (#1357) · 10253a5c

Da Zheng authored Mar 22, 2020

* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.

10253a5c

Update README · 856de790
Minjie Wang authored Mar 22, 2020
```
Update README with both latest and stable doc links
```
856de790

[Doc] Patch tutorial (#1380) · 2cdc4d3c

Minjie Wang authored Mar 22, 2020

* patched 1_first

* done 2_basics

* done 4_batch

* done 1_gcn, 9_gat, 2_capsule

* 4_rgcn.py

* revert

* more fix

2cdc4d3c

20 Mar, 2020 1 commit
- [Hetero] Replace card with num_nodes · 0f40c6e4
  Mufei Li authored Mar 20, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  0f40c6e4
19 Mar, 2020 2 commits
- [KG]Update README and config (#1375) · 1b9bc16b
  xiang song(charlie.song) authored Mar 19, 2020
```
* Update README and config

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal>
```
  1b9bc16b
- [Bug] Multiple fixes (#1374) · 4af02022
  Quan (Andy) Gan authored Mar 19, 2020
```
* multiple fixes

* lint

* lint x2
```
  4af02022
18 Mar, 2020 1 commit
- [Bug] Fix dsttype in GraphSAGE minibatch model (#1371) · 0a51dc54
  Quan (Andy) Gan authored Mar 18, 2020
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* fix for new ntype API for blocks

* adding two new interfaces
```
  0a51dc54
17 Mar, 2020 2 commits

[DGL-KE] Add license to every file header (#1368) · 635dfb4a

Chao Ma authored Mar 17, 2020

* update metis

* update

* update dataloader

* update dataloader

* new script

* update

* update

* update

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* update

* update dataloader

* update

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* update

* Add license to every filer header

635dfb4a

[DGL-KE] Add METIS preprocessing pipeline (#1365) · f8ae6350

Chao Ma authored Mar 17, 2020

* update metis

* update

* update dataloader

* update dataloader

* new script

* update

* update

* update

* update

* update

* update

* update

* update dataloader

* update

* update

* update

* update

* update

f8ae6350

16 Mar, 2020 3 commits

Update (#1366) · 2ce0e21b
Mufei Li authored Mar 16, 2020

2ce0e21b
Update instructions for building from source (#1363) · 16627575
Mufei Li authored Mar 16, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
16627575

[Model] RGCN mini-batch training; Better bipartite graph support (#1337) · 6111ea46

Minjie Wang authored Mar 16, 2020

* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore

6111ea46

15 Mar, 2020 4 commits
- Update README.md · 9120ee60
  Minjie Wang authored Mar 15, 2020
  
  9120ee60
- [Model][Perf] Improve sage sampling performance (#1364) · d876680a
  Minjie Wang authored Mar 15, 2020
```
* improve speed

* fix bugs

* upd reg test
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  d876680a
- fix. (#1358) · f9ad1c80
  Da Zheng authored Mar 14, 2020
```
Co-authored-by: Chao Ma <mctt90@gmail.com>
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  f9ad1c80
- [KG] partition a KG. (#1351) · eb71c804
  Da Zheng authored Mar 14, 2020
```
* partition a KG.

* get tid.

* support builtin

* fix a minor bug.
Co-authored-by: Chao Ma <mctt90@gmail.com>
```
  eb71c804
14 Mar, 2020 1 commit

[DGL-LifeSci] WLN for Reaction Center Prediction (#1360) · 545cc065

Mufei Li authored Mar 14, 2020

* Update

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* Update

545cc065

13 Mar, 2020 3 commits

[Optimization] Optimize performance of COOSort (#1349) · 5a1ef70f

xiang song(charlie.song) authored Mar 13, 2020



* Fix coo_sort

* Add COOSort test

* Fix

* omp

* coo2csr can benefit from sorted coo

* Add more test code

* Add LIBCXX_ENABLE_PARALLEL_ALGORITHMS to Makefile

* upd

* Turn off LIBCXX_ENABLE_PARALLEL_ALGORITHMS by default
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

5a1ef70f

Update (#1359) · f3b866f4
Mufei Li authored Mar 13, 2020

f3b866f4

[Feature] Filtered MRR metrics for R-GCN example (#1298) · 6c7c4039

hgalioulline authored Mar 13, 2020



* Add filtered metrics for R-GCN example

* Add new line to end of file

* Add evaluation protocol argument option for R-GCN example

* Update README
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

6c7c4039

12 Mar, 2020 2 commits
- Fix for dataloader (#1353) · 87842db4
  xiang song(charlie.song) authored Mar 12, 2020
  
  87842db4
- [BUGFIX] metis partition should generate a subgraph to the original graph. (#1352) · 3938b399
  Da Zheng authored Mar 11, 2020
```
* fix a partition.

* add comments.
```
  3938b399
11 Mar, 2020 2 commits

[Feature] Improve the speed of to_bidirected (#1327) · 1a584ced

Da Zheng authored Mar 10, 2020

* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.

1a584ced

fix sampler. (#1350) · 9432cd63
Da Zheng authored Mar 10, 2020

9432cd63

10 Mar, 2020 4 commits
- [DOC] Improve the docstring of GATConv and new APIs (#1339) · 988c8b20
  Zihao Ye authored Mar 11, 2020
```
* upd

* upd

* upd

* upd

* upd
```
  988c8b20
- [KG] make batch size compatible with neg sample size (#1343) · e6584043
  Da Zheng authored Mar 10, 2020
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* adjust batch size.

* fix for eval.py

* adjust parameters in distributed training.

* move code.
```
  e6584043
- [Optimization] Optimize CompactGraph (#1328) · 7b3a7b14
  xiang song(charlie.song) authored Mar 10, 2020
```
* compact

* prealloc memory for hashtable

* Fix

* upd

* Reduce memory

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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  7b3a7b14
- rewrite to use dataloader (#1333) · 20e1bb45
  Quan (Andy) Gan authored Mar 10, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  20e1bb45
09 Mar, 2020 6 commits

[DGL-KE] Clean up argument for DGL-KE (#1325) · d98c71ef

Chao Ma authored Mar 09, 2020

* update

* update

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* clean up args

* change args for eval

* update

* update

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* update num_worker=8

* add num_proc=1

* update

* update

* add eval percent

* update

* update

* update

* save emb

* update

* update

* update

* update

* update

* remove neg_chunk_size

* update

* update

* update

* remove

* update

* remove

* change num_thread

d98c71ef

[Error Message] Improve the error message (#1342) · 53b39f06
Jinjing Zhou authored Mar 09, 2020
```
* patch

* fix+1

* add readme

* fix error message
```
53b39f06
[Test] Instruction for write regression test (#1341) · a0139923
Jinjing Zhou authored Mar 09, 2020
```
* patch

* fix+1

* add readme
```
a0139923
[Test] asv conf fix (#1338) · 9abe0413
Jinjing Zhou authored Mar 09, 2020
```
* patch

* fix+1
```
9abe0413

[KGE] Kg loader (#1300) · f9ba3cdc

xiang song(charlie.song) authored Mar 09, 2020



* Now dataset accepts user define datasets

* UPdate README

* Fix eval

* Fix

* Fix Freebase

* Fix

* Fix

* upd

* upd

* Update README

* Update some docstrings.

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-8-26.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-78.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal>

f9ba3cdc

[KG] save config when saving the model (#1336) · 614acf2c
Da Zheng authored Mar 08, 2020
```
* save config.

* save more.
```
614acf2c

08 Mar, 2020 3 commits

Fix submodule has submodules (#1332) · 7ee77f72
xiang song(charlie.song) authored Mar 09, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal>
```
7ee77f72
[Fix] asv patch (#1330) · 081e5e0f
Jinjing Zhou authored Mar 08, 2020

081e5e0f

[Feature] add metis partitioning to DGL (#1308) · 0e153c4b

Da Zheng authored Mar 07, 2020



* add metis.

* add test.

* construct partition id.

* link to METIS github repo.

* update metis.

* add a tool for partitioning a graph.

* update metis.

* update.

* update.

* fix metis.

* fix lint

* fix indent.

* another way of building metis.

* disable metis in windows.

* test windows

* fix.

* disable metis for windows properly.

* fix for tensorflow.

* skip test for gpu.

* make graph symmetric

* address comments.

* more comments.

* fix compile

* fix a bug.

* add test.

* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>

0e153c4b

07 Mar, 2020 1 commit

[Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) · a9520f71

Quan (Andy) Gan authored Mar 08, 2020

* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data

a9520f71