Commits · 929c99ed96938cfa7c565159f6e6def3dde799d7 · OpenDAS / dgl

05 Aug, 2020 2 commits

[Model] Rewrite GraphSAGE example (#1938) · 929c99ed
Quan (Andy) Gan authored Aug 05, 2020

929c99ed

[Transform] Add add_reverse_edges (#1936) · 879e4ae5

xiang song(charlie.song) authored Aug 05, 2020



* Add add_reverse_edges and is_simple_graph
Update to_bidirected

* remove is_simple_graph

* Fix lint

* to bidirected only support cpu

* support copy ndata

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

879e4ae5

04 Aug, 2020 5 commits

Fix timing (#1930) · 1232961e
xiang song(charlie.song) authored Aug 04, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
1232961e
[API] remove the expand_as_pair call (#1929) · fae26dd1
Quan (Andy) Gan authored Aug 04, 2020

fae26dd1
[Doc] dgl.sampling docstring fixes (#1928) · 823eb5be
Quan (Andy) Gan authored Aug 04, 2020

823eb5be

[Dataset] SBMMixtureDataset (#1920) · 451ed6d8

Xiangkun Hu authored Aug 04, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* SBMMixture dataset

* Update sbm.py

* fix example

* Update sbm.py

* Revert "Update sbm.py"

This reverts commit 066db5c89bd5e159981ae7cad1bfb883ea5db71d.

* Update sbm.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

451ed6d8

fix bugs (#1885) · 4a8cc489

Hao Xiong authored Aug 04, 2020


Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

4a8cc489

03 Aug, 2020 14 commits

[hotfix] Allow creating graph from edges with restrict formats excluding coo. (#1926) · d2ccd218
Zihao Ye authored Aug 04, 2020
```
* upd

* upd

* upd

* upd
```
d2ccd218
[hotfix] Replace `request_format` and related APIs with `create_format_` (#1924) · ca5a13fe
Zihao Ye authored Aug 04, 2020
```
* upd

* upd

* upd

* upd
```
ca5a13fe

[Dataset] RedditDataset (#1914) · 2c141229

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* RedditDataset

* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

2c141229

[Dataset] GNNBenchmarkDataset (#1912) · 37aa99c5

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* gnn benchmark dataset

* Update gnn_benckmark.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

37aa99c5

[Fix] Update ogb examples according to new API. (#1922) · 56339b34
Zihao Ye authored Aug 03, 2020
```
* upd

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal>
```
56339b34

[Dataset] SSTDataset (#1918) · 001d7937

Xiangkun Hu authored Aug 03, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* SSTDataset

* Update tree.py

001d7937

[Dataset] GDELTDataset (#1911) · 73b9c6f1

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* gdelt dataset

* Update gdelt.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

73b9c6f1

[Dataset] ICEWS18Dataset (#1913) · 06ea03d0

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* ICEWS18Dataset
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

06ea03d0

[Dataset] Update dataset hash with deterministic function (#1919) · b5be4f4b
Tong He authored Aug 03, 2020
```
* update hash with deterministic function

* update docstring

* add test on determination
```
b5be4f4b

[Dataset] Builtin LegacyTUDataset and TUDataset (#1891) · 39ed0966

Tong He authored Aug 03, 2020



* add LegacyTUDataset and TUDataset

* update docstrings and url

* update docstrings

* add hash to fix save/load

* update docstring and use hash
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

39ed0966

[Bugfix] Fix _deprecate not found error for now (#1916) · 65e9644e
Quan (Andy) Gan authored Aug 03, 2020

65e9644e

[Dataset] BitcoinOTCDataset (#1910) · 22485e58

Xiangkun Hu authored Aug 03, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* bitcoinotc dataset

* Update bitcoinotc.py

22485e58

[Dataset] QM7bDataset (#1915) · d22f96fe

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* QM7bDataset

* Update qm7b.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

d22f96fe

[Distributed] Support multiple servers (#1886) · a4c931a9

Da Zheng authored Aug 02, 2020



* client init graph on the backup servers.

* fix.

* test multi-server.

* fix anonymous dist tensors.

* check #parts.

* fix init_data

* add multi-server multi-client tests.

* update tests in kvstore.

* fix.

* verify the loaded partition.

* fix a bug.

* fix lint.

* fix.

* fix example.

* fix rpc.

* fix pull/push handler for backup kvstore

* fix example readme.

* change ip.

* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

a4c931a9

02 Aug, 2020 4 commits

[Dataset] PPIDataset (#1906) · 9bcce7be

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Revert "Revert "PPIDataset""

This reverts commit 6938a4cbe3ac6e38d3e0188b5699e5c952a6102e.

* update doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

9bcce7be

[Example] Cluster Sage for ogb (#1850) · 4f7bd0d0

xiang song(charlie.song) authored Aug 03, 2020



* Cluster-Sage

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>

4f7bd0d0

[Dataset] KarateClubDataset (#1897) · 743c3840

Xiangkun Hu authored Aug 02, 2020



* karateclub dataset

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update karate.py

* doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

743c3840

Fix (#1909) · cb2c4ec1
xiang song(charlie.song) authored Aug 02, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
cb2c4ec1

01 Aug, 2020 4 commits

[Distributed][Example] Distributed training for unsupervised graphsage (#1853) · 56bbf9cb

xiang song(charlie.song) authored Aug 02, 2020



* Standalone can run

* fix

* Add save

* Fix

* Fix

* Fix

* Fix

* debug

* test

* test

* Fix

* Fix

* log

* Fix

* fix

* Profile

* auto sync grad

* update

* add test for unsupervised dist training

* upd

* Fix lr

* Fix update

* sync

* fix

* Revert "fix"

This reverts commit d5caa7398b36125f6d6e2c742a95c6ff4298c9e9.

* Fix

* unsupervised

* Fix

* remove debug

* Add test case for dist_graph find_edges()

* Fix

* skip tensorflow test for find_edges

* Update readme

* remove some test

* upd

* Update partition_graph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

56bbf9cb

[bugfix] Fix the memory leak issue of Cluster GAT under 0.5 kernel and... · 34a067ea

Zihao Ye authored Aug 02, 2020

[bugfix] Fix the memory leak issue of Cluster GAT under 0.5 kernel and simplify the bipartite GAT. (#1908)

* uipd

* upd

* upd

* upd

* upd

34a067ea

Hot Fix docstring (#1907) · 303e4236
xiang song(charlie.song) authored Aug 01, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
303e4236

[Dataset] Citation graph (#1902) · b347590a

xiang song(charlie.song) authored Aug 01, 2020



* citation graph

* GCN example use new citatoin dataset

* mxnet gat

* triger

* Fix

* Fix gat

* fix

* Fix tensorflow dgi

* Fix appnp, graphsage for mxnet

* fix monet and sgc for mxnet

* Fix tagcn

* update sgc, appnp
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

b347590a

31 Jul, 2020 10 commits

[Distributed] add copy_partitions.py (#1866) · 4be4b134

Da Zheng authored Jul 31, 2020



* fix bugs.

* eval on both vaidation and testing.

* add script.

* update.

* update launch.

* make train_dist.py independent.

* update readme.

* update readme.

* update readme.

* update readme.

* generate undirected graph.

* rename conf_file to part_config

* use rsync

* make train_dist independent.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-115.us-west-2.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

4be4b134

[Example] cluster-gat for ogb (#1875) · 8b64037e

xiang song(charlie.song) authored Aug 01, 2020



* cluster-gat for ogb

* Fix new graph

* Inference using minibatch style

* update readme

* Update params
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>

8b64037e

[KVStore] Fix bug in barrier. (#1904) · e5e1a99d
Chao Ma authored Jul 31, 2020
```
* update

* update

* fix lint

* update

* update
```
e5e1a99d
upd (#1905) · 03f251ce
Zihao Ye authored Jul 31, 2020

03f251ce

[hotfix] Activate kernel unittest for tensorflow (#1895) · a28bfa9f

Zihao Ye authored Jul 31, 2020



* upd

* upd

* upd

* upd

* upd

* trigger

* simplify unittest
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

a28bfa9f

[Dataset] Builtin MiniGCDataset (#1890) · 18c960a1

Tong He authored Jul 31, 2020

* add minigc

* fix

* update docstrings

* update docstring

* add hash to fix save/load

* update hash

18c960a1

[Dataset] Builtin GINDataset (#1889) · f05bd497

Tong He authored Jul 31, 2020



* update GINDataset

* update

* update docstring

* update

* update docstrings

* add hash to fix save/load

* fix some stupid bugs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

f05bd497

[Dataset] Add hash function to distinguish instances from the same dataset class (#1894) · fb02aa2d
Tong He authored Jul 31, 2020
```
* add hash function in base data classes

* update doc
```
fb02aa2d
[Bugfix] add DGLWarning class (#1898) · 71c7ee0e
Quan (Andy) Gan authored Jul 31, 2020
```
* add DGLWarning class

* docstrings

* lint
```
71c7ee0e
[Hotfix] fix excessive warnings (#1896) · b9ae536e
Minjie Wang authored Jul 31, 2020

b9ae536e

30 Jul, 2020 1 commit

[Dataset] Builtin knowledge graph dataset (#1881) · dbb028ac

xiang song(charlie.song) authored Jul 30, 2020



* buildin knowledge graph dataset

* upd

* docstring

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Tong He <hetong007@gmail.com>

dbb028ac