Commits · 18bfec24cfa78477469bbc4637bbf3c54741f3d2 · OpenDAS / dgl

07 Aug, 2020 5 commits

[hotfix] Refactor edge softmax module (#1967) · 18bfec24
Zihao Ye authored Aug 07, 2020
```
* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd
```
18bfec24
Remove duplicate code of deepwalk (#1965) · 3611a66e
xiang song(charlie.song) authored Aug 07, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
```
3611a66e

[Refactor] Enable new kernel in all message passing APIs (#1953) · 22167f72

Minjie Wang authored Aug 07, 2020

* WIP: frame refactor

* new frame

* simple update_all builtin

* move all subgraph routines into the same file

* sddmm & spmm schedule; node & edge udf

* degree bucketing

* some tricky 0deg corner cases

* bug in frame append

* merge test_hetero_basics and test_basics

* some code rearange

* fix test_heterograph

* add mean spmm

* enable all builtin combinations

* pass gpu test

* pass pytorch tests

* wip

* fix some pt debugging codes

* fix bug in mxnet backward

* pass all mxnet utests

* passed tf tests

* docstring

* lint

* lint

* fix broadcasting bugs

* add warning and clamp for mean reducer

* add test for zero-degree mean

* address comments

* lint

* small fix

22167f72

[Dataset] RedditDataset change data.train_mask to numpy array (#1961) · 5d5436ba

Xiangkun Hu authored Aug 07, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

5d5436ba

[HotFix] Fix add_reverse_edges (#1960) · 35c9473b
xiang song(charlie.song) authored Aug 07, 2020
```
* Hot fix

* more test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
35c9473b

06 Aug, 2020 7 commits

[Doc] Dataset api doc add save_info(), load_info() (#1954) · 3d837706

Xiangkun Hu authored Aug 06, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update doc

* Update data.rst
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

3d837706

[Hot fix][Dataset] knowledge graph dataset statistics output (#1952) · 78651016
xiang song(charlie.song) authored Aug 06, 2020
```
* Hot fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
78651016
[Bug] Fix VRGCN with new dataset (#1955) · ba110e50
Quan (Andy) Gan authored Aug 06, 2020

ba110e50

[Doc] Fix some format issues in dataset api doc (#1951) · 13ea9ddb

Xiangkun Hu authored Aug 06, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update doc
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

13ea9ddb

fix (#1950) · cebf3364
Jinjing Zhou authored Aug 06, 2020

cebf3364

[Dataset] Fix the docstring format for dgl.data section (#1941) · 967ecb80

Tong He authored Aug 06, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update data rst

* update data doc and docstring

* API doc rst for dataset

* docstring

* update api doc

* add url format

* update docstring

* update citation graph

* update knowledge graph

* update gc datasets

* fix index

* Rst fix (#3)

* Fix syntax

* syntax

* update docstring

* update doc (#4)

* final update

* fix rdflib

* fix rdf
Co-authored-by: HuXiangkun <huxk_hit@qq.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

967ecb80

[Example] Remove duplicated edges in RRN Sudoku example (#1946) · 3fa8d755

Xiangkun Hu authored Aug 06, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* remove duplicate edges

* Update README.md

3fa8d755

05 Aug, 2020 5 commits

[hotfix] Remove dead code (#1942) · f9bde91f
xiang song(charlie.song) authored Aug 05, 2020
```
* Remove dead code

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
f9bde91f

[Distributed] DistDataloader (#1901) · 4f499c7f

Jinjing Zhou authored Aug 05, 2020



* 111

* 111

* fix

* 111

* fix

* 11

* fix

* lint

* Update __init__.py

* lint

* fix

* lint

* fix

* fix

* fix

* fix

* fix

* try fix

* try fix

* fix

* Revert "fix"

This reverts commit a0b954fd4e99b7df92b53db8334dcb583d6e1551.

* fixes.

* fix.

* fix test.

* fix exit.

* fix.

* fix

* fix

* lint

* lint

* lint

* fix

* Update .gitignore

* 111

* fix

* 111

* 111

* fff

* 1111

* 111

* 1325315

* ffff

* f???

* fff

* 1111

* 111

* fix

* 111

* asda

* 1111

* 11

* 123

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* spawn

* 1231231

* up

* 111

* fix

* fix

* Revert "fix"

This reverts commit 7373f95312fdcaa36d2fc330bf242339e89c045d.

* fix

* fix

* 1111

* fix

* fix tests

* start kvclient as early as possible.

* lint

* fix test

* lint

* 1111

* fix

* fix

* 111

* fix

* fix

* 1

* fix

* fix

* lint

* fix

* lint

* lint

* remove quit

* fix

* lint

* fix

* fix several

* lint

* fix minor

* fix

* lint
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

4f499c7f

[hotfix] Allow broadcastable expand in the backward phase of gspmm (#1939) · c801a164

Zihao Ye authored Aug 05, 2020



* upd

* upd

* upd

* upd

* upd

* trigger

* simplify unittest

* patch-sp
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

c801a164

[Model] Rewrite GraphSAGE example (#1938) · 929c99ed
Quan (Andy) Gan authored Aug 05, 2020

929c99ed

[Transform] Add add_reverse_edges (#1936) · 879e4ae5

xiang song(charlie.song) authored Aug 05, 2020



* Add add_reverse_edges and is_simple_graph
Update to_bidirected

* remove is_simple_graph

* Fix lint

* to bidirected only support cpu

* support copy ndata

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

879e4ae5

04 Aug, 2020 5 commits

Fix timing (#1930) · 1232961e
xiang song(charlie.song) authored Aug 04, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
1232961e
[API] remove the expand_as_pair call (#1929) · fae26dd1
Quan (Andy) Gan authored Aug 04, 2020

fae26dd1
[Doc] dgl.sampling docstring fixes (#1928) · 823eb5be
Quan (Andy) Gan authored Aug 04, 2020

823eb5be

[Dataset] SBMMixtureDataset (#1920) · 451ed6d8

Xiangkun Hu authored Aug 04, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* SBMMixture dataset

* Update sbm.py

* fix example

* Update sbm.py

* Revert "Update sbm.py"

This reverts commit 066db5c89bd5e159981ae7cad1bfb883ea5db71d.

* Update sbm.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

451ed6d8

fix bugs (#1885) · 4a8cc489

Hao Xiong authored Aug 04, 2020


Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

4a8cc489

03 Aug, 2020 14 commits

[hotfix] Allow creating graph from edges with restrict formats excluding coo. (#1926) · d2ccd218
Zihao Ye authored Aug 04, 2020
```
* upd

* upd

* upd

* upd
```
d2ccd218
[hotfix] Replace `request_format` and related APIs with `create_format_` (#1924) · ca5a13fe
Zihao Ye authored Aug 04, 2020
```
* upd

* upd

* upd

* upd
```
ca5a13fe

[Dataset] RedditDataset (#1914) · 2c141229

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* RedditDataset

* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

2c141229

[Dataset] GNNBenchmarkDataset (#1912) · 37aa99c5

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* gnn benchmark dataset

* Update gnn_benckmark.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

37aa99c5

[Fix] Update ogb examples according to new API. (#1922) · 56339b34
Zihao Ye authored Aug 03, 2020
```
* upd

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal>
```
56339b34

[Dataset] SSTDataset (#1918) · 001d7937

Xiangkun Hu authored Aug 03, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* SSTDataset

* Update tree.py

001d7937

[Dataset] GDELTDataset (#1911) · 73b9c6f1

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* gdelt dataset

* Update gdelt.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

73b9c6f1

[Dataset] ICEWS18Dataset (#1913) · 06ea03d0

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* ICEWS18Dataset
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

06ea03d0

[Dataset] Update dataset hash with deterministic function (#1919) · b5be4f4b
Tong He authored Aug 03, 2020
```
* update hash with deterministic function

* update docstring

* add test on determination
```
b5be4f4b

[Dataset] Builtin LegacyTUDataset and TUDataset (#1891) · 39ed0966

Tong He authored Aug 03, 2020



* add LegacyTUDataset and TUDataset

* update docstrings and url

* update docstrings

* add hash to fix save/load

* update docstring and use hash
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

39ed0966

[Bugfix] Fix _deprecate not found error for now (#1916) · 65e9644e
Quan (Andy) Gan authored Aug 03, 2020

65e9644e

[Dataset] BitcoinOTCDataset (#1910) · 22485e58

Xiangkun Hu authored Aug 03, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* bitcoinotc dataset

* Update bitcoinotc.py

22485e58

[Dataset] QM7bDataset (#1915) · d22f96fe

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* QM7bDataset

* Update qm7b.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

d22f96fe

[Distributed] Support multiple servers (#1886) · a4c931a9

Da Zheng authored Aug 02, 2020



* client init graph on the backup servers.

* fix.

* test multi-server.

* fix anonymous dist tensors.

* check #parts.

* fix init_data

* add multi-server multi-client tests.

* update tests in kvstore.

* fix.

* verify the loaded partition.

* fix a bug.

* fix lint.

* fix.

* fix example.

* fix rpc.

* fix pull/push handler for backup kvstore

* fix example readme.

* change ip.

* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

a4c931a9

02 Aug, 2020 4 commits

[Dataset] PPIDataset (#1906) · 9bcce7be

Xiangkun Hu authored Aug 03, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Revert "Revert "PPIDataset""

This reverts commit 6938a4cbe3ac6e38d3e0188b5699e5c952a6102e.

* update doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

9bcce7be

[Example] Cluster Sage for ogb (#1850) · 4f7bd0d0

xiang song(charlie.song) authored Aug 03, 2020



* Cluster-Sage

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>

4f7bd0d0

[Dataset] KarateClubDataset (#1897) · 743c3840

Xiangkun Hu authored Aug 02, 2020



* karateclub dataset

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update karate.py

* doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

743c3840

Fix (#1909) · cb2c4ec1
xiang song(charlie.song) authored Aug 02, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
cb2c4ec1