index.py

from Iterative_masking.core import *

Iterative_masking.core.gen_MSAs(filepath="examples",
         filename=["PF00072.fasta"],
         new_dir="results",
         pdf=False,
         T=1,
         sample_all=False,
         Iters=200,
         pmask=0.1,
         num=[600],
         depth=1e10, #to do entire MSA
         generate=False,
         print_all=False,
         range_vals=False,
         phylo_w=False)