add higashi

c6386098 · wangsen · 127b175d · c6386098 · c6386098 · c6386098
Commit c6386098 authored Oct 12, 2024 by wangsen
20 changed files
--- a/higashi/__init__.py
+++ b/higashi/__init__.py
--- a/higashi/main_cell.py
+++ b/higashi/main_cell.py
--- a/higashi/main_cell_debug.py
+++ b/higashi/main_cell_debug.py
--- a/higashi/main_cell_debug2.py
+++ b/higashi/main_cell_debug2.py
--- a/higashi/scCompartment.py
+++ b/higashi/scCompartment.py
--- a/higashi/scTAD.py
+++ b/higashi/scTAD.py
--- a/image/image-1.png
+++ b/image/image-1.png
--- a/image/image.png
+++ b/image/image.png
--- a/requirements.txt
+++ b/requirements.txt
+matplotlib==3.7.3
--- a/setup.py
+++ b/setup.py
--- a/tutorials/4DN_sci-Hi-C_Kim et al.ipynb
+++ b/tutorials/4DN_sci-Hi-C_Kim et al.ipynb
--- a/tutorials/FastHigashi_dipc_Tan_mousebrain_500k.ipynb
+++ b/tutorials/FastHigashi_dipc_Tan_mousebrain_500k.ipynb
--- a/tutorials/FastHigashi_dipc_Tan_mousebrain_integration_500k.ipynb
+++ b/tutorials/FastHigashi_dipc_Tan_mousebrain_integration_500k.ipynb
--- a/tutorials/FastHigashi_m3c_Heffel_DevHumanBrain_250k&500k.ipynb
+++ b/tutorials/FastHigashi_m3c_Heffel_DevHumanBrain_250k&500k.ipynb
--- a/tutorials/FastHigashi_m3c_Lee_PFC_500k.ipynb
+++ b/tutorials/FastHigashi_m3c_Lee_PFC_500k.ipynb
--- a/tutorials/FastHigashi_m3c_Liu_mousehippo_500k.ipynb
+++ b/tutorials/FastHigashi_m3c_Liu_mousehippo_500k.ipynb
--- a/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part1.ipynb
+++ b/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part1.ipynb
--- a/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part2.ipynb
+++ b/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part2.ipynb
--- a/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part3.ipynb
+++ b/tutorials/FastHigashi_m3c_Tian_HumanBrain_500k_part3.ipynb
--- a/tutorials/FastHigashi_sciHiC_Kim_4DN.ipynb
+++ b/tutorials/FastHigashi_sciHiC_Kim_4DN.ipynb