Add dependencies (#374)

Add dependencies

* include ndv4-topo.xml in cuda docker images
* require requests version to avoid RequestsDependencyWarning

dockerfile/cuda11.1.1.dockerfile

@@ -119,6 +119,9 @@ RUN echo PATH="$PATH" > /etc/environment && \
     echo LD_LIBRARY_PATH="$LD_LIBRARY_PATH" >> /etc/environment && \
     echo SB_MICRO_PATH="$SB_MICRO_PATH" >> /etc/environment
 
+# Add config files
+ADD dockerfile/etc /opt/microsoft/
+
 WORKDIR ${SB_HOME}
 
 ADD third_party third_party

dockerfile/etc/ndv4-topo.xml

+<system version="1">
+  <cpu numaid="0" affinity="0000ffff,0000ffff" arch="x86_64" vendor="AuthenticAMD" familyid="23" modelid="49">
+    <pci busid="ffff:ff:01.0" class="0x060400" link_speed="16 GT/s" link_width="16">
+      <pci busid="0001:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0101:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0002:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0102:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+    </pci>
+  </cpu>
+  <cpu numaid="1" affinity="0000ffff,0000ffff" arch="x86_64" vendor="AuthenticAMD" familyid="23" modelid="49">
+    <pci busid="ffff:ff:02.0" class="0x060400" link_speed="16 GT/s" link_width="16">
+      <pci busid="0003:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0103:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0004:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0104:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+    </pci>
+  </cpu>
+  <cpu numaid="2" affinity="0000ffff,0000ffff" arch="x86_64" vendor="AuthenticAMD" familyid="23" modelid="49">
+      <pci busid="ffff:ff:03.0" class="0x060400" link_speed="16 GT/s" link_width="16">
+      <pci busid="000b:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0105:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="000c:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0106:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+    </pci>
+  </cpu>
+  <cpu numaid="3" affinity="0000ffff,0000ffff" arch="x86_64" vendor="AuthenticAMD" familyid="23" modelid="49">
+    <pci busid="ffff:ff:04.0" class="0x060400" link_speed="16 GT/s" link_width="16">
+      <pci busid="000d:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0107:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="000e:00:00.0" class="0x030200" link_speed="16 GT/s" link_width="16"/>
+      <pci busid="0108:00:00.0" class="0x020700" link_speed="16 GT/s" link_width="16"/>
+    </pci>
+  </cpu>
+</system>

setup.py

@@ -155,6 +155,7 @@ def run(self):
         'omegaconf==2.0.6',
         'pandas>=1.1.5',
         'pyyaml>=5.3',
+        'requests>=2.28.1',
         'seaborn>=0.11.2',
         'tcping>=0.1.1rc1',
         'urllib3>=1.26.9',