GitLab

Updated tests of serialization of CustomNonbondedForce, though test omits comparison of interaction group sets since I couldn't figure out how to do that.

Removed _d suffix from debug libraries

Fixed bug in OpenCL implementation of GBSA on CPU devices

Make element basically immutable

Disable OpenCL platform on known-buggy macs

units on getPMEParameters

Change API reference links to 6.0

Fix broken Python wrappers

A previous commit had changed OpenMM_headers.i to OpenMMSwigHeaders.i without changing the corresponding include statement in OpenMM.i.

Fixed a compilation error in C wrappers

Install SWIG interface definition to the include directory, so outside plugins can use it when building their Python APIs

Install SWIG interface definition to the include directory, so outside plugins can use it when building their Python APIs

Exposed getMolecules() in the public API

Added step limit for LocalEnergyMinimizer in Modeller.addHydrogens() to fix hangs on bad structures

Added step limit for LocalEnergyMinimizer in Modeller.addHydrogens() to prevent hangs with bad structures.

Add CheckpointReporter

Fixed some bugs in addExtraParticles() that affect the CHARMM polarizable force field