Commits · f83da363e8fea689f40545e2c66e7fda19181404 · tsoc / openmm

"tests/TestVariableVerletIntegrator.h" did not exist on "0aad1354d6649a5c0487bb61469b08ae34330c6e"

20 Jan, 2015 3 commits
- Merge pull request #790 from peastman/fortran · f83da363
  peastman authored Jan 20, 2015
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Fixed Fortran compilation errors caused by function names being too long
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  f83da363
- Fixed Fortran compilation errors caused by function names being too long · 690c80f1
  peastman authored Jan 20, 2015
  
  690c80f1
- Merge pull request #789 from swails/fixgb · d0e168ad
  peastman authored Jan 20, 2015
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Fixgb
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  d0e168ad
19 Jan, 2015 3 commits
- Fix the Amber test suite for recent fix to nonperiodic salt concentration with · 91e353a8
  Jason Swails authored Jan 18, 2015
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cutoff GB.
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  91e353a8
- Update CHARMM OBC2 nonperiodic salt force save file for recent fix. · 2228188c
  Jason Swails authored Jan 18, 2015
  
  2228188c
- Merge branch 'master' into fixgb · 7ef9b3b7
  Jason Swails authored Jan 18, 2015
  
  7ef9b3b7
18 Jan, 2015 1 commit
- Fix Amber custom GB models with both a salt concentration *and* a cutoff. · f9bd59ef
  Jason Swails authored Jan 18, 2015
  
  f9bd59ef
17 Jan, 2015 4 commits
- Merge pull request #788 from swails/master · 8bd44206
  peastman authored Jan 17, 2015
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Grammar fixes in the doxygen comments.
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  8bd44206
- Grammar fixes in the doxygen comments. · 6ad2aff3
  Jason Swails authored Jan 17, 2015
  
  6ad2aff3
- Merge pull request #787 from peastman/step · 78b80ccf
  peastman authored Jan 16, 2015
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Variable step size integrators were scaling the step size incorrectly
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  78b80ccf
- Variable step size integrators were scaling the step size incorrectly · bd01a379
  peastman authored Jan 16, 2015
  
  bd01a379
15 Jan, 2015 9 commits
- Merge pull request #765 from swails/stochastic-forces · 923ccea5
  peastman authored Jan 15, 2015
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Make it so that random forces and integrators generate unique seeds each time a Context is made
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  923ccea5
- Merge pull request #784 from rmcgibbo/whoops · 9972e293
  peastman authored Jan 15, 2015
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Fix for #780
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  9972e293
- Tweak numbering formatting. · df99352d
  Jason Swails authored Jan 15, 2015
  
  df99352d
- :class: -> :meth: where appropriate. · 8a2e438e
  Jason Swails authored Jan 15, 2015
  
  8a2e438e
- ``XXX`` -> :class:`XXX` · c2505aad
  Jason Swails authored Jan 15, 2015
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principle -> principal... I'm a bozo.
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  c2505aad
- whoops · e16acd1b
  Robert McGibbon authored Jan 15, 2015
  
  e16acd1b
- Merge pull request #783 from peastman/nan · a770b1b0
  peastman authored Jan 15, 2015
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Catch nan coordinates before they can produce a segfault
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  a770b1b0
- Catch nan coordinates before they can produce a segfault · 7dc2ff9e
  peastman authored Jan 15, 2015
  
  7dc2ff9e
- Add a section at the end of the manual about stochastic forces, integrators, and · c2191b61
  Jason Swails authored Jan 15, 2015
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random numbers.  Add 2 citations about Langevin synchronization.  Convert the
references.bib file to UNIX line endings.
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  c2191b61
14 Jan, 2015 2 commits
- Merge pull request #780 from rmcgibbo/win32 · 7bdd4a67
  peastman authored Jan 14, 2015
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Some windows changes
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  7bdd4a67
- append to path instead · d0509247
  Robert McGibbon authored Jan 14, 2015
  
  d0509247
13 Jan, 2015 3 commits
- Some windows changes · 2f42ac0a
  Robert T. McGibbon authored Jan 13, 2015
  
  2f42ac0a
- Merge pull request #774 from rmcgibbo/bytes-4 · bfdae096
  peastman authored Jan 12, 2015
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Fix typemap for str/bytes -> std::string
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  bfdae096
- might fix segfault · 21bf9597
  Robert McGibbon authored Jan 12, 2015
  
  21bf9597
12 Jan, 2015 10 commits
- Merge pull request #776 from peastman/bug · a9c75e52
  peastman authored Jan 12, 2015
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Fixed bug in reference CustomCompoundBondForce
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  a9c75e52
- Updated test cases to catch a bug that was just fixed · 5ae844b2
  peastman authored Jan 12, 2015
  
  5ae844b2
- Fixed bug in reference CustomCompoundBondForce · 29856d18
  peastman authored Jan 12, 2015
  
  29856d18
- Merge branch 'bytes-4' of github.com:rmcgibbo/openmm into bytes-4 · 4b33803e
  Robert McGibbon authored Jan 12, 2015
  
  4b33803e
- Merge pull request #773 from rmcgibbo/bytes-2 · c66e086e
  peastman authored Jan 12, 2015
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stripUnits behavior with bytes
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  c66e086e
- Merge pull request #775 from rmcgibbo/message · 85494077
  peastman authored Jan 12, 2015
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.message -> str()
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  85494077
- .message -> str() · 1d450fd8
  Robert McGibbon authored Jan 12, 2015
  
  1d450fd8
- Fix typemap for str/bytes -> std::string · 7a4b3601
  Robert McGibbon authored Jan 12, 2015
  
  7a4b3601
- that statement doesn't do anything · e197379c
  Robert McGibbon authored Jan 12, 2015
  
  e197379c
- bytes issue · 40632e11
  Robert McGibbon authored Jan 12, 2015
  
  40632e11
10 Jan, 2015 2 commits
- The Drude and RPMD plugins both also use random numbers -- change default seed · be8bd376
  Jason Swails authored Jan 10, 2015
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to 0 here as well.
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  be8bd376
- Change comments so that it does not reference generating seeds from the clock. · d422c306
  Jason Swails authored Jan 10, 2015
  
  d422c306
09 Jan, 2015 3 commits
- Fix an include. · 118aab89
  Jason Swails authored Jan 09, 2015
  
  118aab89
- Add a little more explanation. · 3129342e
  Jason Swails authored Jan 09, 2015
  
  3129342e
- Add notes in the doxygen comments about setRandomNumberSeed resulting in a · b705a22e
  Jason Swails authored Jan 09, 2015
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"truly" random seed being generated from the wall clock upon Context creation.
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  b705a22e