Commits · f5acdd7a66984e939ada24c755c7988f65b0cfe9 · tsoc / openmm

29 Aug, 2014 1 commit
- CustomManyParticleForce offers two different "permutation modes". Implemented... · f5acdd7a
  peastman authored Aug 28, 2014
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CustomManyParticleForce offers two different "permutation modes".  Implemented it for Reference and CPU platforms.
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  f5acdd7a
22 Aug, 2014 1 commit
- Optimizations to CUDA version of CustomManyParticleForce · 150d943a
  peastman authored Aug 22, 2014
  
  150d943a
21 Aug, 2014 1 commit
- CUDA version of CustomManyParticleForce uses neighbor list · bddaf4e7
  peastman authored Aug 21, 2014
  
  bddaf4e7
20 Aug, 2014 1 commit
- Wrote code to build neighbor list for CUDA version of CustomManyParticleForce · e3b631f6
  peastman authored Aug 20, 2014
  
  e3b631f6
19 Aug, 2014 3 commits
- Implemented exclusions for CUDA version of CustomManyParticleForce · 786e1ee7
  peastman authored Aug 19, 2014
  
  786e1ee7
- Implemented type filters for CUDA version of CustomManyParticleForce · 65b56ee1
  peastman authored Aug 19, 2014
  
  65b56ee1
- Continuing to work on CUDA implementation of CustomManyParticleForce · 785592f4
  peastman authored Aug 19, 2014
  
  785592f4
18 Aug, 2014 1 commit
- Beginning of CUDA implementation of CustomManyParticleForce · 890963b9
  peastman authored Aug 18, 2014
  
  890963b9
15 Aug, 2014 2 commits
- Eliminated some unnecessary memory allocation in CpuCustomManyParticleForce · 0d5e0b55
  peastman authored Aug 15, 2014
  
  0d5e0b55
- Finished CPU implementation of CustomManyParticleForce · 14d3c584
  peastman authored Aug 15, 2014
  
  14d3c584
14 Aug, 2014 2 commits
- Began vectorizing CustomManyParticleForce · be0d5cbe
  peastman authored Aug 14, 2014
  
  be0d5cbe
- CPU version of CustomManyParticleForce is multithreaded · 0e2ffb4b
  peastman authored Aug 14, 2014
  
  0e2ffb4b
13 Aug, 2014 1 commit
- Continuing to implement CPU version of CustomManyParticleForce · 1bc8e327
  peastman authored Aug 13, 2014
  
  1bc8e327
09 Aug, 2014 1 commit
- Began working on CPU implementation of CustomManyParticleForce · b2ce1c29
  peastman authored Aug 08, 2014
  
  b2ce1c29
07 Aug, 2014 1 commit
- Finished reference implementation of CustomManyParticleForce · 0ca8bdee
  peastman authored Aug 06, 2014
  
  0ca8bdee
06 Aug, 2014 1 commit
- Continuing to create reference implementation of CustomManyParticleForce · b6e65ad6
  peastman authored Aug 06, 2014
  
  b6e65ad6
05 Aug, 2014 1 commit
- Began implementing CustomManyParticleForce · e1a378b7
  peastman authored Aug 05, 2014
  
  e1a378b7
30 Jul, 2014 1 commit
- Fix crash with empty interaction groups · 92d5b696
  peastman authored Jul 30, 2014
  
  92d5b696
28 Jul, 2014 1 commit
- Bug fixes to PNaCl vectors · 7c54418c
  peastman authored Jul 28, 2014
  
  7c54418c
25 Jul, 2014 1 commit
- CPU platform works on PNaCl · 0bb293f8
  peastman authored Jul 25, 2014
  
  0bb293f8
24 Jul, 2014 2 commits
- Fixed compilation error on Android · 86a8c924
  Peter Eastman authored Jul 24, 2014
  
  86a8c924
- Consolidated logic for determining if vector instructions are supported · 080691d3
  peastman authored Jul 24, 2014
  
  080691d3
23 Jul, 2014 2 commits
- Preliminary support for Chrome portable native client · 35041ae1
  peastman authored Jul 23, 2014
  
  35041ae1
- Fixed error in OpenCL MonteCarloBarostat in double precision · debe1662
  peastman authored Jul 23, 2014
  
  debe1662
15 Jul, 2014 1 commit
- Fixed bug when running on a CPU device · c9c5997b
  peastman authored Jul 15, 2014
  
  c9c5997b
27 Jun, 2014 3 commits
- Commented out testEinsteinCrystal(), since it failed much too often · d3b791c5
  peastman authored Jun 27, 2014
  
  d3b791c5
- Fixed some test failures · fbbfe67a
  peastman authored Jun 27, 2014
  
  fbbfe67a
- Fixed a rare memory corruption error when roundoff causes tile indices to be wrong · ece75910
  peastman authored Jun 27, 2014
  
  ece75910
03 Jun, 2014 1 commit
- Fixed a crash with virtual sites in double precision mode · 3bf0edb4
  peastman authored Jun 03, 2014
  
  3bf0edb4
02 Jun, 2014 1 commit
- Fixed bug when multiple virtual sites depend on the same particles (see bug 2019) · 496f469a
  peastman authored Jun 02, 2014
  
  496f469a
14 May, 2014 1 commit
- Preliminary support for ARM/Android. · 454caac9
  peastman authored May 14, 2014
  
  454caac9
07 May, 2014 1 commit
- Fixed a bug in a test case · cafd3d74
  peastman authored May 07, 2014
  
  cafd3d74
06 May, 2014 1 commit
- Fixed bug using multiple devices with PME · f1991b3c
  peastman authored May 06, 2014
  
  f1991b3c
28 Apr, 2014 1 commit
- change back to #ifdef · 8e3c539a
  smikes authored Apr 28, 2014
  
  8e3c539a
27 Apr, 2014 2 commits
- MSVC 2013 defines conformant round(), workaround not needed · aa6f6bd7
  Sam Mikes authored Apr 27, 2014
  
  aa6f6bd7
- VS2013 requires <algorithm> for std::min, std::max · 169083af
  Sam Mikes authored Apr 27, 2014
  
  169083af
24 Apr, 2014 1 commit
- Created CUDA and OpenCL implementations of LocalCoordinatesSite · c88213f8
  peastman authored Apr 24, 2014
  
  c88213f8
23 Apr, 2014 1 commit
- Created LocalCoordinatesSite, including reference implementation · 4be5daf1
  peastman authored Apr 23, 2014
  
  4be5daf1
12 Apr, 2014 2 commits
- Undid more erroneous changes. · fe312d9f
  John Chodera (MSKCC) authored Apr 12, 2014
  
  fe312d9f
- Undid some debug info. · 38db8fb1
  John Chodera (MSKCC) authored Apr 12, 2014
  
  38db8fb1