GitLab

Created reference implementation of DIIS for converging AMOEBA dipoles.  Also some minor code cleanup.

Plugins work with CPU platform.  This involved separating the reference implementations of plugins into their own libraries.

Platform specific header files get installed.  This allows plugins to be built with just an OpenMM installation, not a full source tree.

Fixed units for AMOEBA dipole and quadrupole moment (now returns Debye and Debye * Angstrom, not Debye/10 and Debye*Angstrom/100.)  Rationale is that Debye/10 is not a common physical unit.  Note that CUDA platform still gets quadrupole to be incorrect.

Modified the AmoebaMultipoleForce.getSystemMultipoleMoments method with two extra arguments; toggle whether to evaluate energy/force and select maximum multipole order.

Fixed test failures caused by linking to the same library twice, once statically and once dynamically

Modified Reference platform of AmoebaVdwForce to handle PBC, cutoffs, tapering and dispersion correction

added tests to TestCudaAmoebaVdwForce for dispersion correction using box of 216 water molecules
AmoebaVdwForce and AmoebaMultipoleForce now throw execptions if cutoff > 0.5*(box size)

Added AmoebaMultipoleForce::getSystemMultipoleMoments() to get system multipole moments; based on TINKER subroutine moments()

TorsionTorsion grids reordered, if needed, so that first angle is the 'slow' index
Fixes for MonteCarloBarostat