GitLab

Create alternative constructor for Simulation from XML files

Compare 1-4 scaling factors by looking at size of difference

Updated the user guide to clarify how to save simulations results

different platforms and OpenMM versions, while Checkpoint files can not
be exchanged between platforms or versions of Openmm.

Also changes a bunch of old-style Python classes to new-style (Py3 only has the
latter)

factors.

Install typemaps.i for use by plugins

Fix calling createSystem with unitless hydrogenMass

Improper torsions without wildcards override ones with

Updated documentation on installing to discuss conda

Add a method for retrieving list of matching templates to ForceField

Update travis to use CUDA 7.5

Add methods to retrieve residues without matching forcefield residue templates

Created property for disabling the PME stream

Fixed bug in selecting device index

Enable wildcard use for Atom Types