Commits · cea03eea70ed71f248dbeb6ea447e83053e5c6af · tsoc / openmm

28 Aug, 2020 1 commit
- Fixed uninitialized memory (#2819) · cea03eea
  peastman authored Aug 27, 2020
  
  cea03eea
20 Aug, 2020 1 commit

Fixed range overflow with very large numbers of atoms (#2806) · cdc0789a

peastman authored Aug 20, 2020

* Fixed range overflow with very large numbers of atoms

* More fixes to overflow with large numbers of atoms

* Fix test failures

cdc0789a

18 Aug, 2020 1 commit

Updated to latest values for physical constants (#2802) · b4543a46

peastman authored Aug 18, 2020

* Updated to latest values for physical constants

* Updated documentation on physical constants

* Updated Python unit definitions

* Fixed constants in test case

* Added a comment

b4543a46

12 Aug, 2020 1 commit
- Attempt at fixing Azure builds (#2804) · 8bc2ed94
  peastman authored Aug 11, 2020
```
* Attempt at fixing Azure builds

* Fixed an incorrect path
```
  8bc2ed94
09 Aug, 2020 1 commit
- Merge pull request #2800 from Dann239/tabulated · 3de880c4
  peastman authored Aug 09, 2020
```
Fixed typo in forcefield.py: 2DFunction -> 3DFunction
```
  3de880c4
08 Aug, 2020 1 commit
- Fixed typo in forcefield.py: 2DFunction -> 3DFunction · 240a1fa7
  Dann239 authored Aug 09, 2020
  
  240a1fa7
30 Jul, 2020 1 commit
- Merge pull request #2790 from peastman/integratorparams · cc3c4b54
  peastman authored Jul 30, 2020
```
States can save integrator parameters
```
  cc3c4b54
29 Jul, 2020 1 commit
- Bug fixes · 16b6e4aa
  peastman authored Jul 29, 2020
  
  16b6e4aa
28 Jul, 2020 2 commits
- States can save integrator parameters · 46098e35
  peastman authored Jul 28, 2020
  
  46098e35
- States can save integrator parameters · 694c3930
  peastman authored Jul 28, 2020
  
  694c3930
24 Jul, 2020 2 commits
- Merge pull request #2786 from swails/feature/jenkins-new-agents · 03861778
  peastman authored Jul 24, 2020
```
Add arguments needed by the new CUDA agents
```
  03861778
- Add arguments needed by the new CUDA agents · 326402ef
  Jason Swails authored Jul 23, 2020
  
  326402ef
22 Jul, 2020 1 commit
- Merge pull request #2765 from peastman/amoeba · 015bef31
  peastman authored Jul 22, 2020
```
Added new features to AmoebaVdwForce
```
  015bef31
20 Jul, 2020 2 commits
- Fixed compilation error in kernel · 3c2e2613
  Peter Eastman authored Jul 20, 2020
  
  3c2e2613
- Workaround for gcc bug · d54938ac
  Peter Eastman authored Jul 20, 2020
  
  d54938ac
16 Jul, 2020 3 commits
- Merge pull request #2781 from peastman/ppc · f63f9693
  peastman authored Jul 16, 2020
```
Workaround for bug in GCC 8 on PPC
```
  f63f9693
- Fixed errors · c2a049b0
  Peter Eastman authored Jul 16, 2020
  
  c2a049b0
- Workaround for bug in GCC 8 on PPC · 2a97d8c9
  peastman authored Jul 16, 2020
  
  2a97d8c9
15 Jul, 2020 1 commit
- Merge pull request #2778 from peastman/unsupported · fd667c74
  peastman authored Jul 15, 2020
```
Added check for unsupported OpenCL implementation
```
  fd667c74
13 Jul, 2020 2 commits
- Additional check for unsupported platforms · 639b0716
  peastman authored Jul 13, 2020
  
  639b0716
- Added check for unsupported OpenCL implementation · fb68776e
  peastman authored Jul 13, 2020
  
  fb68776e
02 Jul, 2020 1 commit

Use Python 3.6 for Mac build (#2764) · ac5a8f71

peastman authored Jul 02, 2020

* Use Python 3.8 for Mac build

* Another attempt at getting the Mac build to use Python 3

* Fixed syntax error

* More attempts at getting Python 3 on Mac

* More attempts at getting Python 3 on Mac

* More attempts at getting Python 3 on Mac

* More attempts at getting Python 3 on Mac

ac5a8f71

01 Jul, 2020 6 commits
- Updated Python API for AmoebaVdwForce · fddfeecb
  Peter Eastman authored Jul 01, 2020
  
  fddfeecb
- CUDA implementation of new features in AmoebaVdwForce · d925ed4b
  Peter Eastman authored Jul 01, 2020
  
  d925ed4b
- Merge pull request #2611 from craabreu/periodic_variables_metadynamics · eae83041
  peastman authored Jul 01, 2020
```
[WIP] Changes in Metadynamics
```
  eae83041
- Bug fixes to AmoebaVdwForce · d923b056
  Peter Eastman authored Jul 01, 2020
  
  d923b056
- Cleanup to reference implementation of AmoebaVdwForce · 745f88b7
  Peter Eastman authored Jul 01, 2020
  
  745f88b7
- Handle overloaded functions in C and Fortran wrappers · 9f57dbb0
  Peter Eastman authored Jul 01, 2020
  
  9f57dbb0
30 Jun, 2020 1 commit
- Continuing to new features in AmoebaVdwForce · 5e392f97
  Peter Eastman authored Jun 30, 2020
  
  5e392f97
29 Jun, 2020 1 commit
- Began implementing new features in AmoebaVdwForce · b6b43fdf
  Peter Eastman authored Jun 29, 2020
  
  b6b43fdf
26 Jun, 2020 3 commits
- Bug fix · 691aa78c
  Charlles Abreu authored Jun 25, 2020
  
  691aa78c
- resolved PR #2611 merge conflicts · 5270f858
  Charlles Abreu authored Jun 25, 2020
  
  5270f858
- Fixed TestMetadynamics · 697ab72e
  Charlles Abreu authored Jun 25, 2020
  
  697ab72e
25 Jun, 2020 3 commits
- Included getPeriodic in tabulated function serialization test · 82bad78d
  Charlles Abreu authored Jun 25, 2020
  
  82bad78d
- Safer periodic attribute reading in ForceField · 4fa7e25d
  Charlles Abreu authored Jun 25, 2020
  
  4fa7e25d
- Replaced not_equal macro by notEqual function · 2507ee7f
  Charlles Abreu authored Jun 25, 2020
  
  2507ee7f
24 Jun, 2020 4 commits
- Fixed sanity checks in spline filters · 6bf99439
  Charlles Abreu authored Jun 24, 2020
  
  6bf99439
- Metadynamic with periodic 2D/3D tabulated functions · 77b488b8
  Charlles Abreu authored Jun 24, 2020
  
  77b488b8
- ForceField prepared for specification of continuous tabulated functions · 1f6f23ce
  Charlles Abreu authored Jun 24, 2020
  
  1f6f23ce
- Tests for periodic tabulated functions · 112fd213
  Charlles Abreu authored Jun 24, 2020
  
  112fd213