GitLab

Removed virtual machine.

Bug fixes and improvements to PDBxFile

Further improvements to multi-GPU scaling

Created reader for PDBx/mmCIF files

Further improvements to multi-GPU performance

Improvements to multi-GPU performance

testInstallation.py gives more information about errors

Fix compatibility with `unit.Quantity` and numpy arrays by having array methods accept and pass through relevant arguments.

range check getPlatform()

Add a test for the various numpy attributes (and the arguments they take) for
the unit module.

Traceback (most recent call last):
  File ".../python/tests/TestNumpyCompatibility.py", line 87, in testNumpyAttributes
    d = self.data.reshape((100, 3))
  File ".../simtk/unit/quantity.py", line 575, in reshape
    return Quantity(self._value.reshape(shape, order=order))
  File ".../simtk/unit/quantity.py", line 142, in __init__
    if value == first_item:
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

Also add a test for new unit numpy capabilities.

Updated broken links in travis badge in README