GitLab

Added benchmarks for ApoA1

Minor optimizations

Remove duplicate patches

Improved behavior of adding force field directories

Fixed incorrect synchronization on Volta 

Attempt at fixing errors on Travis on macOS

CHARMM36 supports disulfide bonds

Fixed reference to self.force when using a switch function for LJ

Fixed error in determining protein size when building membrane

Use g++ instead of clang and fix PythonInstall

This reverts commit cfb0d18d.

This reverts commit 7c0d5aa3.

Fall back to nosetests on Mac

So easy_install pip, then pip install pytest

clang is tested everywhere else, and it's not as routinely up-to-date on
my Jenkins machine.

PythonInstall failed on Linux machines where the build/install
directories had paths with spaces in them.

Fixed CUDA error when working with multiple contexts

Optimizations to updateParametersInContext()

Fixed error in SWIG wrapper for CustomIntegrator.addTabulatedFunction()

Bug fix

Optimized initializing interaction groups

CustomNonbondedForce with interaction groups uses neighbor lists