Commits · b79d9e84f37b8f78c14ec9e7914104cb28b45ef7 · tsoc / openmm

29 Nov, 2011 3 commits
- Fixed references for free energy plugin · b79d9e84
  Peter Eastman authored Nov 29, 2011
  
  b79d9e84
- Added John's edit to free energy plugin sectio · e79f0751
  Mark Friedrichs authored Nov 29, 2011
  
  e79f0751
- Final documentation for 4.0 · b39cd4e4
  Peter Eastman authored Nov 29, 2011
  
  b39cd4e4
18 Nov, 2011 3 commits
- Minor documentation updates · 45d017ab
  Peter Eastman authored Nov 18, 2011
  
  45d017ab
- Joy's first pass edits of chapters 1-11 · 51ddfb26
  Joy Ku authored Nov 18, 2011
  
  51ddfb26
- Joy's edits · 25880017
  Joy Ku authored Nov 18, 2011
  
  25880017
17 Nov, 2011 1 commit
- Added remark about this release not including AMOEBA parameters for nucleic acids · 018603a0
  Mark Friedrichs authored Nov 17, 2011
  
  018603a0
15 Nov, 2011 1 commit
- Wrote installation chapter. Lots of other minor changes. · 4d61460d
  Peter Eastman authored Nov 15, 2011
  
  4d61460d
14 Nov, 2011 1 commit
- Added Tom's documentation on RPMD plugin. Added section on platform-specific... · 2b3aa37d
  Peter Eastman authored Nov 14, 2011
```
Added Tom's documentation on RPMD plugin.  Added section on platform-specific properties.  Updated installation instructions.
```
  2b3aa37d
10 Nov, 2011 2 commits
- Edited discussion of AMOBEA nonbonded methods · 076eb95e
  Mark Friedrichs authored Nov 10, 2011
```
Removed mention of separate AMOEBA water file
```
  076eb95e
- Lots of updates based on Joy's comments · 691a45f1
  Peter Eastman authored Nov 10, 2011
  
  691a45f1
08 Nov, 2011 2 commits
- Removed reference to amoeba_water.xml · 3a55714e
  Mark Friedrichs authored Nov 08, 2011
  
  3a55714e
- Included AMOEBA implicit solvent example/options · 40f02bd9
  Mark Friedrichs authored Nov 08, 2011
  
  40f02bd9
07 Nov, 2011 4 commits
- Joy's edits · 7bf291e0
  Joy Ku authored Nov 07, 2011
  
  7bf291e0
- Added documentation for nonbonded ixns/induced dipoles specific to AMOEBA · 55190bff
  Mark Friedrichs authored Nov 07, 2011
  
  55190bff
- Updated developer guide for 4.0. · d274d65b
  Peter Eastman authored Nov 07, 2011
  
  d274d65b
- Added section describing free energy plugin · 1b4e96da
  Mark Friedrichs authored Nov 07, 2011
```
Removed benchmark sections
Modified page numbering for Part I, Sections 8,9 from Roman numerals to decimal values
```
  1b4e96da
02 Nov, 2011 1 commit
- Further updates to application guide · fd0060da
  Peter Eastman authored Nov 02, 2011
  
  fd0060da
01 Nov, 2011 1 commit
- Application guide is mostly complete (exception installation section) · 358ce20f
  Peter Eastman authored Nov 01, 2011
  
  358ce20f
29 Oct, 2011 1 commit
- Continuing to write application guide · 271dadf6
  Peter Eastman authored Oct 29, 2011
  
  271dadf6
27 Oct, 2011 1 commit
- Continuing to write application guide · a9a74ff8
  Peter Eastman authored Oct 27, 2011
  
  a9a74ff8
26 Oct, 2011 1 commit
- Began updating manual for 4.0. · 8960d7b2
  Peter Eastman authored Oct 26, 2011
  
  8960d7b2
24 Oct, 2011 1 commit
- Edited and commented on draft · 805d4144
  Joy Ku authored Oct 24, 2011
  
  805d4144
20 Oct, 2011 1 commit
- Beginning of application guide · ca9e8f8d
  Peter Eastman authored Oct 20, 2011
  
  ca9e8f8d
03 Oct, 2011 1 commit
- Replaced references to usage of OBC algorithm for calculating Born radii in... · e9505f5b
  Mark Friedrichs authored Oct 03, 2011
```
Replaced references to usage of OBC algorithm for calculating Born radii in OpenMM/AMOEBA w/ the Grycuk algorithm
```
  e9505f5b
29 Jul, 2011 2 commits
- Minor documentation updates for 3.1. Created PDFs. · b354e0a1
  Peter Eastman authored Jul 29, 2011
  
  b354e0a1
- Minor edits · 5f127e38
  Mark Friedrichs authored Jul 29, 2011
  
  5f127e38
28 Jul, 2011 1 commit
- Added benchmarks · f3935f4e
  Mark Friedrichs authored Jul 28, 2011
  
  f3935f4e
22 Jul, 2011 2 commits
- addition of OPENMMCUDA_EXPORT for Windows compile · 97c767f8
  Mark Friedrichs authored Jul 22, 2011
  
  97c767f8
- Mods for Release 3.1 · 938c9def
  Mark Friedrichs authored Jul 22, 2011
  
  938c9def
18 Jul, 2011 1 commit
- Updated manual for 3.1 · 6f24ee8a
  Peter Eastman authored Jul 18, 2011
  
  6f24ee8a
24 May, 2011 1 commit
- Added text recommending users download the CVS development version and not the... · 825d4eb6
  Mark Friedrichs authored May 24, 2011
```
Added text recommending users download the CVS development version and not the 0.6 version of gccxml from the gccxml website.
```
  825d4eb6
20 May, 2011 1 commit
- Updated installation instructions and directory names, e.g., for the examples. · 9eb00769
  Joy Ku authored May 20, 2011
  
  9eb00769
17 May, 2011 1 commit
- Fixed a mistake in the Python installation instructions · 798e651a
  Peter Eastman authored May 17, 2011
  
  798e651a
30 Mar, 2011 5 commits
- Updated Doxyfile to document XmlSerializer · ea788347
  Peter Eastman authored Mar 30, 2011
  
  ea788347
- Created PDF versions of Users Guide and Developer Guide · 23291759
  Peter Eastman authored Mar 30, 2011
  
  23291759
- Update to Amoeba chapter · 24214023
  Mark Friedrichs authored Mar 30, 2011
  
  24214023
- Update to Amoeba chapter · 6dd461c2
  Mark Friedrichs authored Mar 30, 2011
  
  6dd461c2
- Amoeba plugin update · ee3a1104
  Mark Friedrichs authored Mar 30, 2011
  
  ee3a1104
29 Mar, 2011 1 commit
- Update Amoeba chapter w/ benchmarks · 2e3c5dc9
  Mark Friedrichs authored Mar 29, 2011
  
  2e3c5dc9