GitLab

Lots of mystical CMake incantations to make Cuda platform compile both static and dynamic libraries correctly

 * capitalization of gpuTypes.h
 * various cmake issues

removed redundant qualification ‘ReferenceForce::’ on member ‘getDeltaRPeriodic’ to get compile on linux

Changed how kernels get initialized.  StandardMMForceField now has you set the 1-4 interactions explicitly.  CMMotionRemover allows the removal frequency to be set.

Added license to kernel and kernel include files

                                     overrides of bonded gathers for testing
BrookGbsa:                           OBC parameters fixed; added energy calculation
BrookCommon:                         added utility methods for allocating arrays