Commits · 826ac7bcd449f7647ce5c68e998f46d5e538dacc · tsoc / openmm

01 Dec, 2017 2 commits
- Build sphinx PDF in travis test branch · 826ac7bc
  jchodera authored Dec 01, 2017
  
  826ac7bc
- Eliminate stray non-ASCII characters from references.bib since this breaks sphinx · 5e35cd7a
  jchodera authored Dec 01, 2017
  
  5e35cd7a
30 Nov, 2017 6 commits
- Merge pull request #1946 from peastman/patch · b5581e88
  peastman authored Nov 30, 2017
```
Can build arbitrary membranes by supplying a pre-equilibrated patch
```
  b5581e88
- Can build arbitrary membranes by supplying a pre-equilibrated patch · 6ea84b2e
  peastman authored Nov 30, 2017
  
  6ea84b2e
- Merge pull request #1944 from peastman/ipq · a2c77a35
  peastman authored Nov 30, 2017
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Updated reference for ipq force field
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  a2c77a35
- Updated reference for ipq force field · c9fa23df
  peastman authored Nov 29, 2017
  
  c9fa23df
- Merge pull request #1943 from peastman/membrane · 8ba3d9b6
  peastman authored Nov 29, 2017
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Created membrane builder
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  8ba3d9b6
- Fixed error on Python 2 · 539678d0
  peastman authored Nov 29, 2017
  
  539678d0
29 Nov, 2017 4 commits
- Added documentation for building membranes · 1d97e9ff
  peastman authored Nov 29, 2017
  
  1d97e9ff
- Created test case for addMembrane() · 4e37c418
  peastman authored Nov 29, 2017
  
  4e37c418
- Merge branch 'master' into membrane · 65920c60
  peastman authored Nov 29, 2017
  
  65920c60
- Merge pull request #1942 from peastman/ff · ec580215
  peastman authored Nov 29, 2017
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Added new Amber and CHARMM force fields
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  ec580215
28 Nov, 2017 1 commit
- Added new Amber and CHARMM force fields · 9d9a3f4f
  peastman authored Nov 28, 2017
  
  9d9a3f4f
22 Nov, 2017 4 commits
- Merge pull request #1938 from peastman/includes · 2eb2c464
  peastman authored Nov 22, 2017
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Improvement to processing of includes in force fields
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  2eb2c464
- Improvement to processing of includes in force fields · 4111024b
  peastman authored Nov 22, 2017
  
  4111024b
- Merge pull request #1937 from peastman/propers · b7fbe622
  peastman authored Nov 22, 2017
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Optimized creation of proper torsions
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  b7fbe622
- Optimized creation of proper torsions · 762ffcee
  peastman authored Nov 22, 2017
  
  762ffcee
20 Nov, 2017 3 commits
- Merge branch 'master' into membrane · e4974837
  peastman authored Nov 20, 2017
  
  e4974837
- Fixed problems with POPC and POPE PDB files · c767ed1a
  peastman authored Nov 20, 2017
  
  c767ed1a
- Merge branch 'master' into membrane · 60b840e6
  peastman authored Nov 20, 2017
  
  60b840e6
19 Nov, 2017 2 commits
- Merge pull request #1935 from jchodera/fix-forcefield · 4ffc9e3f
  peastman authored Nov 19, 2017
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Remove optimization to ForceField's LennardJonesGenerator that was causing issues with CHARMM conversion
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  4ffc9e3f
- Remove optimization to ForceField LennardJonesGenerator that was causing... · 03f87950
  John Chodera authored Nov 19, 2017
```
Remove optimization to ForceField LennardJonesGenerator that was causing issues with CHARMM conversion
```
  03f87950
14 Nov, 2017 1 commit
- Added PDB files for POPC and POPE · 6f26c4c5
  peastman authored Nov 14, 2017
  
  6f26c4c5
12 Nov, 2017 3 commits
- Merge pull request #1933 from swails/test-cuda-versions · 76d0252c
  peastman authored Nov 12, 2017
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Test both CUDA 8 and CUDA 9 (and have it work concurrently).
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  76d0252c
- Test both CUDA 8 and CUDA 9 (and have it work concurrently). · 0447a9b5
  Jason Swails authored Nov 12, 2017
  
  0447a9b5
- Merge pull request #1932 from peastman/contiguous · cee3b812
  peastman authored Nov 11, 2017
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Require atoms and residues to be contiguous
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  cee3b812
10 Nov, 2017 1 commit
- Require atoms and residues to be contiguous · d4c9eb1d
  Peter Eastman authored Nov 10, 2017
  
  d4c9eb1d
07 Nov, 2017 2 commits
- Merge pull request #1927 from peastman/cudaerror · 33e2c3cd
  peastman authored Nov 07, 2017
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Fixed error using CUDA 8.0 toolkit with 9.0 driver
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  33e2c3cd
- Fixed error using CUDA 8.0 toolkit with 9.0 driver · 820acd5f
  Peter Eastman authored Nov 07, 2017
  
  820acd5f
04 Nov, 2017 1 commit
- Merge pull request #1924 from peastman/segfault · 4810bac7
  peastman authored Nov 03, 2017
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Fixed a segfault
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  4810bac7
03 Nov, 2017 1 commit
- Fixed a segfault · 0fc3a50a
  peastman authored Nov 03, 2017
  
  0fc3a50a
07 Oct, 2017 2 commits
- Merge pull request #1915 from peastman/nbfix · 956df416
  peastman authored Oct 07, 2017
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Fixed bug in LennardJonesGenerator
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  956df416
- Fixed bug in LennardJonesGenerator · 9f25f4fa
  peastman authored Oct 06, 2017
  
  9f25f4fa
26 Sep, 2017 4 commits
- Merge pull request #1908 from JoaoRodrigues/asym_chain_fix · 57f3be7e
  peastman authored Sep 25, 2017
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Fixed chain labeling in mmCIF files IO.
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  57f3be7e
- Fixed test file name. Humans should not multithread. · 8d59a6be
  João Rodrigues authored Sep 25, 2017
  
  8d59a6be
- Changed format to 'pdbx' for consistency within the test framework. Added... · 42a6db25
  João Rodrigues authored Sep 25, 2017
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Changed format to 'pdbx' for consistency within the test framework. Added 'cif' to CMakeLists.txt for correctness for the future
```
  42a6db25
- Changed all 'label_*' calls to 'auth_*' calls to match PDB format specifications. · db637054
  João Rodrigues authored Sep 25, 2017
  
  db637054
25 Sep, 2017 3 commits
- Added test for multiple chains in mmCIF files · 9a5004bf
  João Rodrigues authored Sep 25, 2017
  
  9a5004bf
- Removed references to 'label_asym_id' and corrected atomKey to use proper chainIdCol values. · 774638c3
  João Rodrigues authored Sep 25, 2017
  
  774638c3
- Merge pull request #1906 from peastman/volta · f3e727df
  peastman authored Sep 25, 2017
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Support for Volta
```
  f3e727df