Commits · 7a6f4b2fb9be87d0a49e636b2cedc1503125cdde · tsoc / openmm

14 Apr, 2014 7 commits
- Cleanup to the recent serialization code changes · 7a6f4b2f
  peastman authored Apr 14, 2014
  
  7a6f4b2f
- Merge pull request #410 from jchodera/debugging-group-interactions · 436d542d
  peastman authored Apr 14, 2014
```
Added missing serialization support for CustomNonbondedForce group interactions
```
  436d542d
- Fixed a bug in serialization. · fe5b499d
  John Chodera (MSKCC) authored Apr 14, 2014
  
  fe5b499d
- Added defaults for backward compatibility. · 9a83528b
  John Chodera (MSKCC) authored Apr 14, 2014
  
  9a83528b
- Undo changes. · f755a61a
  John Chodera (MSKCC) authored Apr 14, 2014
  
  f755a61a
- Removed fiels that didn't below. · ab41f844
  John Chodera (MSKCC) authored Apr 14, 2014
  
  ab41f844
- Added defaults to make serialization of CustomNonbondedForce and... · 36e01b67
  John Chodera (MSKCC) authored Apr 14, 2014
```
Added defaults to make serialization of CustomNonbondedForce and NonbondedForce backward-compatible.
```
  36e01b67
12 Apr, 2014 14 commits
- Added missing serialization of PME parameters alpha, nx, ny, nz for NonbondedForce. · d0186cb2
  John Chodera (MSKCC) authored Apr 12, 2014
  
  d0186cb2
- Fixed same issue in NonbondedForce serialization. · 6d036495
  John Chodera (MSKCC) authored Apr 12, 2014
  
  6d036495
- Removed code left over from debugging. · 8cd01209
  John Chodera (MSKCC) authored Apr 12, 2014
  
  8cd01209
- Changed tabs to spaces. · a3aa0548
  John Chodera (MSKCC) authored Apr 12, 2014
  
  a3aa0548
- getBoolProperty() now returns bool, instead of it. · f015fb7c
  John Chodera (MSKCC) authored Apr 12, 2014
  
  f015fb7c
- Added assertion utility to compare containers. · 8a916db3
  John Chodera (MSKCC) authored Apr 12, 2014
  
  8a916db3
- Added serialization of more properties, as well as unit test extensions for these additions. · f8c52d1b
  John Chodera (MSKCC) authored Apr 12, 2014
  
  f8c52d1b
- Updated tests of serialization of CustomNonbondedForce, though test omits... · 4255709b
  John Chodera (MSKCC) authored Apr 12, 2014
```
Updated tests of serialization of CustomNonbondedForce, though test omits comparison of interaction group sets since I couldn't figure out how to do that.
```
  4255709b
- Added missing serialization for some other properties of CustomNonbondedForce. · 6bd73375
  John Chodera (MSKCC) authored Apr 12, 2014
  
  6bd73375
- Rolled back one more change. · 57d3e0fc
  John Chodera (MSKCC) authored Apr 12, 2014
  
  57d3e0fc
- Undid more erroneous changes. · fe312d9f
  John Chodera (MSKCC) authored Apr 12, 2014
  
  fe312d9f
- Undid an erroneous commit. · 2668d4ba
  John Chodera (MSKCC) authored Apr 12, 2014
  
  2668d4ba
- Undid some debug info. · 38db8fb1
  John Chodera (MSKCC) authored Apr 12, 2014
  
  38db8fb1
- Added missing serialization support for CustomNonbondedForce interaction groups. · a13e3d18
  John Chodera (MSKCC) authored Apr 12, 2014
  
  a13e3d18
11 Apr, 2014 4 commits
- Merge pull request #408 from peastman/debug · 230819d1
  peastman authored Apr 11, 2014
```
Removed _d suffix from debug libraries
```
  230819d1
- File missing from previous commit · 54144f7e
  peastman authored Apr 11, 2014
  
  54144f7e
- Removed _d suffix from debug libraries · 1cb3190e
  peastman authored Apr 11, 2014
  
  1cb3190e
- Merge pull request #407 from peastman/master · 4d51fb04
  peastman authored Apr 11, 2014
```
Fixed bug in OpenCL implementation of GBSA on CPU devices
```
  4d51fb04
10 Apr, 2014 1 commit
- Fixed bug in OpenCL implementation of GBSA on CPU devices · cd0ee42e
  peastman authored Apr 09, 2014
  
  cd0ee42e
09 Apr, 2014 8 commits
- Merge pull request #404 from rmcgibbo/imutable-elements · 71d91890
  peastman authored Apr 09, 2014
```
Make element basically immutable
```
  71d91890
- Merge pull request #401 from rmcgibbo/disable · 88402c54
  peastman authored Apr 09, 2014
```
Disable OpenCL platform on known-buggy macs
```
  88402c54
- Merge pull request #403 from rmcgibbo/units · 31fc3693
  peastman authored Apr 09, 2014
```
units on getPMEParameters
```
  31fc3693
- Merge pull request #402 from rmcgibbo/docs · 6561ecf2
  peastman authored Apr 09, 2014
```
Change API reference links to 6.0
```
  6561ecf2
- Make element basically immutable · c96e2478
  Robert McGibbon authored Apr 09, 2014
  
  c96e2478
- units on getPMEParameters · 78b466c4
  Robert McGibbon authored Apr 09, 2014
  
  78b466c4
- Change API reference links to 6.0 · 17054bdf
  Robert McGibbon authored Apr 09, 2014
  
  17054bdf
- Disable OpenCL platform on known-buggy macs · 9edaf653
  Robert McGibbon authored Apr 09, 2014
  
  9edaf653
05 Apr, 2014 2 commits
- Merge pull request #394 from jchodera/master · 44d4d6b2
  peastman authored Apr 05, 2014
```
Fix broken Python wrappers
```
  44d4d6b2
- A previous commit had changed OpenMM_headers.i to OpenMMSwigHeaders.i without... · 85b25060
  John Chodera (MSKCC) authored Apr 05, 2014
```
A previous commit had changed OpenMM_headers.i to OpenMMSwigHeaders.i without changing the corresponding include statement in OpenMM.i.
```
  85b25060
04 Apr, 2014 4 commits
- Merge pull request #391 from peastman/master · 04658d87
  peastman authored Apr 04, 2014
```
Fixed a compilation error in C wrappers
```
  04658d87
- Fixed a compilation error in C wrappers · eab68afc
  peastman authored Apr 04, 2014
  
  eab68afc
- Merge pull request #390 from peastman/master · 59e15d5d
  peastman authored Apr 04, 2014
```
Install SWIG interface definition to the include directory, so outside plugins can use it when building their Python APIs
```
  59e15d5d
- Merge branch 'master' of https://github.com/peastman/openmm · 598fdaa2
  peastman authored Apr 04, 2014
  
  598fdaa2