GitLab

Deleted all the old hand-generated wrappers.

Updated examples and snapshot of wrappers to what I think is their final form. Fortran no longer uses a RuntimeObjects structure; instead it passes around an opaque handle directly to the Context.

Fix Makefile to set gfortran flag that allows lines of any length to accommodate the machine-generated Fortran module.

Upgrade examples to track Peter's automatically-generated C and Fortran bindings. These are still using a snapshot of the wrappers, slightly hand modified, but they are much closer to the final ones now. When the automated ones are ready and part of the build, these checked-in ones will no longer be necessary.

Added a dummy argument to constructors in Fortran examples because Mark Williamson's compiler didn't like them with no argument.

Examples: now builds CWrappers as a library; modified C builds to use it; added visual studio project to build Argon example in Fortran.
System.h: addForce() wasn't returning the index.

Checkpoint: added HarmonicBond, HarmonicAngle, and PeriodicTorsion to C Wrappers so these can be accessed from the Fortran Module per Mark Williamson's request for Amber.

- MingW, where "WIN32" is set by CMake but the compiler is not Microsoft's (should use _MSC_VER) in that case, and 
- in gcc 4.4 which is fussy about some issues that earlier versions were silent about, such as passing a string constant to a "char*" rather than a "const char*".
I also fixed a syntax error in CMakeLists that showed up in the OpenMM workshop for some unknown reason.

Brook is not currently building correctly; I think it has not yet been fully converted to the getTime() interface needed for variable step integrators.