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Fix #3790: Collision rate for MTS BAOAB Langevin integrator now correctly accounts for number of substeps (#3791)

* Fix #3790: Collision rate for MTS BAOAB Langevin integrator now correctly accounts for number of substeps. Fix suggested by Charlie Matthews (@c-matthews)

* Fix computation of total number of substeps

* Add test for MTS friction

* Fix typo

* Fix yet another typo

* Fix typo and check against analytical result

* Fix typo

* Fix typos

* Fix more typos

* Integrate MTSLangevinIntegrator for longer to allow thermalization

* Revert number of integrator steps

* Update TestIntegrators.py

Fixed a failing test case
Co-authored-by: Peter Eastman <peter.eastman@gmail.com>

* Check for keyword args to createSystem() that are never used

* Fixed incorrect arguments in test cases

* Top level Python module is now "openmm"

* Updated module names in examples

* Updated module names in documentation

* Updated module in CI scripts

* Added deprecation warning