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based on the FindCUDA.cmake that was in the platforms/cuda/cuda-make directory.
Setting of CUDA_NVCC_FLAGS is now in top-level CMakeLists.txt, in case I ever figure out how
to get this working with the cmake 2.8 installed system version of FindCUDA.cmake.
Before this change, there were three separate FindCUDA.cmake areas.  Now there is just one.

All platforms now handle nonbonded exceptions in a consistent way (they ignore cutoffs and periodic boundary conditions).  Also started OpenCL implementation of CustomHbondForce.

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Change Fortran wrapper building script (wrappers/FortranWrapper_Header.xslt) to add line breaks between function and subroutine arguments.  This was needed to keep lines under 132 characters in length

Changed std::fabs to std::abs in AssertionUtilities.h to avoid compile ambiguity error on Windows with TestReferenceCustomHbondForce