GitLab

Modified dummy cuda getLabFramePermanentDipoles from getSystemMultipoles to getInducedDipoles Implementation

Added LabFramePermanentDipole function to the cuda kernels files, but it currently works as getSystemMultipoleMoments

Added LabFramePermanentDipole function to the cuda kernels files, but it currently works as getSystemMultipoleMoments

Created a public verison of the applyRotationMatrix function so that it can be accessed from outside

These are worth fixing because they're in header files that are always included
(rather than just hitting them at OpenMM compile-time). The SWIG interface now
builds without warnings on my machine.

Swigged python docstrings now include documented return values and type
information or their arguments. They are generated in numpydoc format.
Furthermore, all of the Python app layer docstrings have been changed
to numpydoc format. The filterPythonFiles.py script which helps to
generate the Doxygen Python API docs has been updated to reflect these
changes.

New advanced options OPENMM_BUILD_CPU_TESTS, OPENMM_BUILD_SERIALIZATION_TESTS,
OPENMM_BUILD_REFERENCE_TESTS were added to the cmake configuration and disabled
in the OpenCL test matrix element to increase speed. Redundant or unnecessary
apt packages removed from the travis installation.