Commits · 5e1f7d39c99e843b420c3eb6f166bd27ca77a2af · tsoc / openmm

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25 Mar, 2015 1 commit
- Parallelized extraction of inverse matrix for CCMA · 787869c3
  peastman authored Mar 25, 2015
  
  787869c3
21 Feb, 2015 2 commits
- Deleted obsolete debugging code · f72062af
  peastman authored Feb 20, 2015
  
  f72062af
- Combined subfolders in reference source, and renamed a couple of badly named classes · 3d69185a
  peastman authored Feb 20, 2015
  
  3d69185a
20 Feb, 2015 4 commits
- Elimininated obsolete SimTKOpenMMCommon files · 0671c7b0
  peastman authored Feb 20, 2015
  
  0671c7b0
- Cleaned up lots of formatting to be more consistent with the rest of OpenMM · 7fb10336
  peastman authored Feb 20, 2015
  
  7fb10336
- Deleted obsolete logging class · 1d3ffd7b
  peastman authored Feb 20, 2015
  
  1d3ffd7b
- Moved reference platform classes into OpenMM namespace · 9111cca0
  peastman authored Feb 20, 2015
  
  9111cca0
14 Jan, 2015 1 commit
- Removed some unneeded code · 3b2579a5
  Peter Eastman authored Jan 14, 2015
  
  3b2579a5
12 Jan, 2015 1 commit
- Fixed bug in reference CustomCompoundBondForce · 29856d18
  peastman authored Jan 12, 2015
  
  29856d18
19 Dec, 2014 1 commit
- CPU PME works with triclinic boxes · f6aae604
  peastman authored Dec 18, 2014
  
  f6aae604
16 Dec, 2014 1 commit
- CpuNeighborList correctly handles triclinic boxes · 4193a416
  peastman authored Dec 16, 2014
  
  4193a416
11 Dec, 2014 1 commit
- ReferenceNeighborList correctly handles triclinic boxes · 34ddae96
  peastman authored Dec 11, 2014
  
  34ddae96
09 Dec, 2014 1 commit
- Implemented PME for triclinic boxes in reference platform · 9c6011f8
  peastman authored Dec 09, 2014
  
  9c6011f8
03 Dec, 2014 1 commit
- Continuing to implement triclinic boxes in reference platform · 9e2b5a12
  peastman authored Dec 02, 2014
  
  9e2b5a12
02 Dec, 2014 1 commit
- Began implementing triclinic boxes in reference platform · e2977b91
  peastman authored Dec 02, 2014
  
  e2977b91
29 Aug, 2014 1 commit
- CustomManyParticleForce offers two different "permutation modes". Implemented... · f5acdd7a
  peastman authored Aug 28, 2014
```
CustomManyParticleForce offers two different "permutation modes".  Implemented it for Reference and CPU platforms.
```
  f5acdd7a
14 Aug, 2014 1 commit
- CPU version of CustomManyParticleForce is multithreaded · 0e2ffb4b
  peastman authored Aug 14, 2014
  
  0e2ffb4b
13 Aug, 2014 1 commit
- Continuing to implement CPU version of CustomManyParticleForce · 1bc8e327
  peastman authored Aug 13, 2014
  
  1bc8e327
07 Aug, 2014 1 commit
- Finished reference implementation of CustomManyParticleForce · 0ca8bdee
  peastman authored Aug 06, 2014
  
  0ca8bdee
06 Aug, 2014 1 commit
- Continuing to create reference implementation of CustomManyParticleForce · b6e65ad6
  peastman authored Aug 06, 2014
  
  b6e65ad6
05 Aug, 2014 1 commit
- Began implementing CustomManyParticleForce · e1a378b7
  peastman authored Aug 05, 2014
  
  e1a378b7
27 Apr, 2014 1 commit
- VS2013 requires <algorithm> for std::min, std::max · 169083af
  Sam Mikes authored Apr 27, 2014
  
  169083af
23 Apr, 2014 1 commit
- Created LocalCoordinatesSite, including reference implementation · 4be5daf1
  peastman authored Apr 23, 2014
  
  4be5daf1
12 Apr, 2014 2 commits
- Undid more erroneous changes. · fe312d9f
  John Chodera (MSKCC) authored Apr 12, 2014
  
  fe312d9f
- Undid some debug info. · 38db8fb1
  John Chodera (MSKCC) authored Apr 12, 2014
  
  38db8fb1
04 Mar, 2014 1 commit
- fix bug in Reference CustomCompoundBondForce · c52a3d25
  Mike Garrahan authored Mar 04, 2014
  
  c52a3d25
13 Dec, 2013 1 commit
- Reference implementation of AndersenThermostat did not handle massless particles correctly · 8d062ebb
  peastman authored Dec 12, 2013
  
  8d062ebb
09 Dec, 2013 1 commit
- Parallelized SETTLE on CPU platform · 06748808
  peastman authored Dec 09, 2013
  
  06748808
06 Dec, 2013 1 commit
- Major simplification to constraint handling in reference platform · 4d25f4e7
  peastman authored Dec 06, 2013
  
  4d25f4e7
30 Oct, 2013 1 commit
- Minor optimizations to CPU platform: avoid applying periodic boundary conditions unnecessarily · 62c64e3c
  peastman authored Oct 30, 2013
  
  62c64e3c
16 Oct, 2013 1 commit
- Converted lots of ExpressionPrograms to CompiledExpressions · 54e47d2d
  peastman authored Oct 16, 2013
  
  54e47d2d
15 Oct, 2013 2 commits
- Bug fix · 2943d628
  peastman authored Oct 15, 2013
  
  2943d628
- Bug fix, plus a minor optimization to reference platform · dd175b23
  peastman authored Oct 15, 2013
  
  dd175b23
11 Oct, 2013 1 commit
- PME works correctly in CPU platform · e22b8f53
  peastman authored Oct 11, 2013
  
  e22b8f53
10 Oct, 2013 1 commit
- Began creating optimized implementation of direct space nonbonded calculation · 9bc194b9
  peastman authored Oct 10, 2013
  
  9bc194b9
09 Oct, 2013 1 commit
- Optimizations to neighbor list construction · d4d9ce1f
  peastman authored Oct 09, 2013
  
  d4d9ce1f
08 Oct, 2013 1 commit
- Lots of code cleanup related to constraints in the reference platform · e68df534
  peastman authored Oct 08, 2013
  
  e68df534
07 Oct, 2013 1 commit
- Created reference implementation of SETTLE · bb8c2c6f
  peastman authored Oct 07, 2013
  
  bb8c2c6f
15 Aug, 2013 1 commit
- Avoid nans when using PME with Drude particles · f4f5b568
  peastman authored Aug 15, 2013
  
  f4f5b568
14 Aug, 2013 1 commit
- Simplified reference platform code for processing nonbonded exclusions · 4b129949
  peastman authored Aug 14, 2013
  
  4b129949