GitLab

Fixed getTime() calls in _openMMBrookInterface()
Based on Sherm's suggestions:
changed '#ifdef WIN32' to '#ifdef WIN32 _MSC_VER;
reordered include files so that system files after OpenMM files
all include files should be C++ files now (as opposed to C files (<math.h> -> <cmath>

License header changes; force duplication factor to 4; fixed potential problem w/ Shake -- if no constraints, pgm crashes

Added more ik,jl gathers for bonded forces
Redid shared #define setting in CMakeList.txt

                                     overrides of bonded gathers for testing
BrookGbsa:                           OBC parameters fixed; added energy calculation
BrookCommon:                         added utility methods for allocating arrays