Commits · 545a83ee10ed8af207302f2c600b03fea46b35f7 · tsoc / openmm

04 Aug, 2010 4 commits
- Mod to quiet gcc (Ubuntu 4.3.3-5ubuntu4) · 545a83ee
  Mark Friedrichs authored Aug 04, 2010
  
  545a83ee
- Changes to remove compiler warnings · 853ae8e8
  Mark Friedrichs authored Aug 04, 2010
  
  853ae8e8
- Simplified energy conservation test · aa00d2ed
  Mark Friedrichs authored Aug 04, 2010
```
Kinetic energy when using Verlet is calculated as average of v_i-1 and v_i
```
  aa00d2ed
- Fixed errors running on compute 1.1 devices · 0aca702a
  Peter Eastman authored Aug 04, 2010
  
  0aca702a
03 Aug, 2010 1 commit
- Added #include <cstdio>' to fix problem w/ stderr not being found w/ gcc 4.4 · c9b1338b
  Mark Friedrichs authored Aug 03, 2010
  
  c9b1338b
31 Jul, 2010 1 commit
- Optimizations to Amoeba electrostatics kernel · 354f7b67
  Peter Eastman authored Jul 31, 2010
  
  354f7b67
30 Jul, 2010 1 commit
- Further optimizations · c2361935
  Peter Eastman authored Jul 30, 2010
  
  c2361935
29 Jul, 2010 5 commits
- Further optimizations · 72bd8a83
  Peter Eastman authored Jul 29, 2010
  
  72bd8a83
- Improved accuracy of OutOfPlaneBend force · 80d8311e
  Mark Friedrichs authored Jul 29, 2010
  
  80d8311e
- Optimizations to Kirkwood kernel · 2af97193
  Peter Eastman authored Jul 29, 2010
  
  2af97193
- Fixed error when evaluating a tabulated function exactly at its end · b1232a0f
  Peter Eastman authored Jul 29, 2010
  
  b1232a0f
- Removed some accidentally included debugging code · 0df95c59
  Peter Eastman authored Jul 29, 2010
  
  0df95c59
28 Jul, 2010 6 commits
- Parameter file reader did not recognize \r as a delimiter · e4be7792
  Peter Eastman authored Jul 28, 2010
  
  e4be7792
- Fixed compilation errors on Linux · e37555bb
  Peter Eastman authored Jul 28, 2010
  
  e37555bb
- Fixed error in previous checkin · 59e00d79
  Peter Eastman authored Jul 28, 2010
  
  59e00d79
- Timo's changes to more accurately select the fastest device · df5654ef
  Peter Eastman authored Jul 28, 2010
  
  df5654ef
- Fixed parameter scaling issue w/ AmoebaHarmonicBondForce · 12680294
  Mark Friedrichs authored Jul 28, 2010
```
Test use env variable OPENMM_PLUGIN_DIR to find plugin
```
  12680294
- Missing Platform::getDefaultPluginsDirectory · 192670e9
  Mark Friedrichs authored Jul 28, 2010
  
  192670e9
27 Jul, 2010 3 commits
- Fixed bug w/ Torsions · d965d23d
  Mark Friedrichs authored Jul 27, 2010
```
Added export for Windows
Format change to accomadate Windows
```
  d965d23d
- Added code for Amoeba plugin · 3f434415
  Mark Friedrichs authored Jul 27, 2010
  
  3f434415
- Cleaned up for Windows compilation · f38a47e4
  Mark Friedrichs authored Jul 27, 2010
```
Removed cubic/quartic per-atom parameters from AmoebaHarmonicBondForce
```
  f38a47e4
26 Jul, 2010 1 commit

WCA force was overwriting total force vector · 7eaa5d29

Mark Friedrichs authored Jul 26, 2010

Modified out-of-plane bend force to improve stability
Redid arguments to kCalculateAmoebaCudaKirkwood to reduce lmem

7eaa5d29

23 Jul, 2010 2 commits
- Optimization for ATI: replaced if's with predication · 98b09e6f
  Peter Eastman authored Jul 23, 2010
  
  98b09e6f
- Update · 2c6cff12
  Mark Friedrichs authored Jul 23, 2010
  
  2c6cff12
22 Jul, 2010 1 commit
- Initial Amoeba · f7f79b04
  Mark Friedrichs authored Jul 22, 2010
  
  f7f79b04
21 Jul, 2010 4 commits
- Simplified reference code for accumulating energies · 5003591d
  Peter Eastman authored Jul 21, 2010
  
  5003591d
- Replaced a few more divisions by RECIP() · b8c624fa
  Peter Eastman authored Jul 21, 2010
  
  b8c624fa
- Minor optimization: replaced a few divisions by RECIP() calls · 43d61cd1
  Peter Eastman authored Jul 21, 2010
  
  43d61cd1
- Deleted lots of obsolete debugging code from the reference platform · b5858a8e
  Peter Eastman authored Jul 21, 2010
  
  b5858a8e
20 Jul, 2010 3 commits
- Use native_exp and native_log when they are sufficiently accurate · c87cee06
  Peter Eastman authored Jul 20, 2010
  
  c87cee06
- Created CUDA implementation of CMAPTorsionForce · 2a313e48
  Peter Eastman authored Jul 20, 2010
  
  2a313e48
- Added missing OPENMM_EXPORT. · 43b1bc95
  Christopher Bruns authored Jul 20, 2010
  
  43b1bc95
19 Jul, 2010 3 commits
- Created OpenCL implementation of CMAPTorsionForce · 258fd0f1
  Peter Eastman authored Jul 19, 2010
  
  258fd0f1
- Fixed incorrect fix for Windows compilation problems · 7ee0076d
  Peter Eastman authored Jul 19, 2010
  
  7ee0076d
- Various MSVC build issues: · 593d359c
  Christopher Bruns authored Jul 19, 2010
```
  sqrt of an integer is ambiguous
  methods declared to return a value must return a value
```
  593d359c
17 Jul, 2010 1 commit
- Implemented CMAPTorsionForce, including reference implementation · cf36f2e6
  Peter Eastman authored Jul 17, 2010
  
  cf36f2e6
16 Jul, 2010 1 commit
- Debug new spline code on Windows · 7b8089d3
  Christopher Bruns authored Jul 16, 2010
  
  7b8089d3
15 Jul, 2010 3 commits
- Removed an obsolete comment · 77cdc5f1
  Peter Eastman authored Jul 15, 2010
  
  77cdc5f1
- Created SplineFitter · 629a9631
  Peter Eastman authored Jul 15, 2010
  
  629a9631
- Install FreeEnergy plugin (Reference version) to the plugins directory. · e4ca66e4
  Christopher Bruns authored Jul 15, 2010
```
Note that I'm also modifying pyopenmm to be aware of this change.
```
  e4ca66e4