GitLab

* Benchmark enhancements

- Add `--disable-pme-stream` to benchmark.py to easily compare performance without having to build with different default values for `DisablePmeSteam`
- Replace utcnow to remove DeprecationWarning
- Check for nvidia-smi before attempting to launch it
- Mention HIP where appropriate

* Adjust option

* Can use getPlatform() instead of getPlatformByName()

* More concise arguments for getState()

Test no longer runs and prints out a warning when running benchmark.py with --verbose. Fixes #3391

Fix specifying a device will fail to run when multiple OpenCL platforms are available. Specifying `--verbose` prints the following exception:
```
Specified DeviceIndex but not OpenCLPlatformIndex. When multiple platforms are available, a platform index is needed to specify a device.
```

* Overhaul benchmarking script to add lots of new features

* Added another example

* Changes hydrogen mass for benchmarks

* Adds amber case for hydrogen mass
Co-authored-by: David Clark <daclark@nvidia.com>

* Top level Python module is now "openmm"

* Updated module names in examples

* Updated module names in documentation

* Updated module in CI scripts

* Added deprecation warning

* Add benchmarks from Amber20 benchmark suite to standard benchmark script

* Add ensemble option; don't change hydrogen mass in amber input files

* Download and extract .tar.gz using pure python code, no wget/tar dependencies

* Rename amber tests

* Added HMR to make ApoA1 benchmark more stable

* Removed debugging code