- 15 Feb, 2022 1 commit
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Peter Eastman authored
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- 17 Dec, 2021 1 commit
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Mike Henry authored
* Try older miniforge version Use miniforge version that was known to be working * ci bump * switch back to using latest miniforge3 + cleanup miniconda folder at the end of testing for the self-hosted runner' * ci bump * ci bump
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- 23 Nov, 2021 1 commit
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Mike Henry authored
* lets see what blows up! * need to add env file, different name than normal * lets see if setting an env will help it find the base * try forcing the use of mamba * this should break everything, but might make osx work * lets see if this fixes the issue with the extension * ci bump * lets see if a different installer will work * single thread build to see error better * ci bump * ci bump * can't build opencl on m1 * add salt to url to prevent caching * rename to reflect that we can just build CPU * going to add a M1 x86_64 buld and an arm64 build * lets see if I broke 86 * now lets see what happens with arm * forgot to add new build files * try older python version * newer python? * try mini forge * ci bump * unpin doxygen and remove gromacs as a dep * double check where x86_64 libs are getting pulled in * ci bump * try and use conda compiler toolchain and set arch * weird things happend with setting arch * lets see what the arch the runner thinks it is using * try printing arch again * undo shell change * remove changes to shell * make sure I don't break other buikds * fix syntax issue and add new label to actionlint * ci bump * ci bump * lets focus on arm64 builds for now * ci bump * ci bump * try setting arch to build with arch command * split steps up so other builds don't break * see if the cmake step is the only one we need to arch-ify * cleaning things up * cleaning things up * set -j2 for make * we can use the same build step as the otehr builds * now lets see if it can install gromacs * no gromacs, no problem? * remove bit of logic stopping the build * pin doxygen to 1.9.1 * try building openCL * ci bump * ci bump
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- 30 Jul, 2021 1 commit
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Josh A. Mitchell authored
* Accept relative links between documentation sites * add glob to linkinator * Recurse from index.html * Path is relative to server-root * Get all the dots and slashes just right * Report only the broken links * Treat linkinator's --skip argument as regex and skip the ks.uiuc.edu domain * Increase linkinator timeout rather than skip ks.uiuc.edu * typo * another typo * Delete .confirm_shortcut_change
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- 12 Apr, 2021 1 commit
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Peter Eastman authored
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- 10 Feb, 2021 1 commit
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Jaime Rodríguez-Guerra authored
* Add draft GHA-based CI for Linux * Fix events * Dup key * Fix path * Update env vars * More fixes * Fix env vars again * add doxygen * add sudo * Typo * upgrade CUDA * escape newlines * more backslashes * fix CUDA_APT * more env vars fixes * fix missing file * acumulate env_vars * build python wrappers only if requested * add pytest * use $GITHUB_ENV https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-commands-for-github-actions#environment-files * use ${GITHUB_WORKSPACE} * Pin older gromacs * add windows * Provide default values for unbound vars * fixes * this is powershell not cmd * update envs * win fix * make windows use cmd * Change install prefix * fixes * better env files * Increase timeout threshold * set xcode to 10.x * specify action version * fix sdk in macos * split jobs a bit more * build wrappers even if tests failed for core * revert & resort build/test * fix run logic? * install envs in D:\ * add more cudas * allow longer test times * sudo that * fix cuda ver checks * another little fix * one more * missing package * missing dev packages * missing backslash * add nvprof * factor scripts out * export CUDA_PATH * no quotes in env var * add more cudas * fix ci name * fix flags * typo * missing parenthesis * add cuda 11.2 urls * add retry loops for online installations * add library existence tests * verbose * fix sets * CPU and PME are not built in GPU variants; do not test for those * quote? * fix windows checks * add macos opencl * disable opencl tests on macos (but build anyway) * add docs * cd into build for docs! * install then cd * pin sphinxcontrib-bibtex * we need tex in the system * split docs into a separate job * simplify retrying * simplify retrying 2 * do install * fix tlmgr installation * more tex packages * one more * one more * add textcomp to docs * usepackage[utf8]{inputenc} * switch to xelatex? * add xetex * more fonts * do not use xindy * tables can't contain blocks and use tabularcolumns at the same time https://www.sphinx-doc.org/en/master/usage/restructuredtext/directives.html?highlight=tabular#directive-tabularcolumns * build libs in docs too * update docs deps; bring in pdfs * kill server after 404 checks * chage 404 checker * explicit locations needed * cumulative exit codes * override set -e * update README badges * add ppc / arm * missing vbar * not it * one too many extensions * do not test gromacs * manage workspace * source conda.sh * add python version to matrix vars * source first thing * disable unbound checks * add compilers * some more cuda stuff * add CPU only ppc64le * link through stubs * One more way to obtain HOST_USER_ID? * let cmake find cf's opencl * Try with GCC7 * add timeouts for docker based runs * add several attempts for stochastic failures * add tests with conda forge compilers * do not parallelize pytest in docker runs * exclude some known slow tests * enable ccache * forgot conda shell * No need for macos sdk retries * \ -> ^ * fix timestampt windows * export env vars for current step too * unneeded quotes windows? * disable compression on windows? * add ccache in docker too * group commands * fix syntax error * fix version spec * Increase timeout in Docker runs * heh, it's double colon * fix cache timestamp in windows * escape % with %% * ccache in docs too * don't use wrapper package in windows; call vcvarsall directly * More docker variants * Handle ccache env vars in yaml * Re-enable parallel pytest in Docker runs * Delete unwanted azure ymls that I didn't end up using * add some comments * Update badge URL * is that path messing with windows ccache? * add CI-README * Reduce CI matrix * increase timeouts * Add GCC7 on PPC QEmu again (temporarily, just for debugging) * add docker instructions for local debugging * fix start_docker_locally * skip some url checks in docs * Use new package name * update link
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