Commits · 1bdd330d357fbd11c5173c57f220dfc40080716d · tsoc / openmm

"olla/vscode:/vscode.git/clone" did not exist on "73183c6199929d2ac87417950c7ca7e1bc62d09d"

30 Mar, 2011 4 commits
- Added message regarding issue w/ disulfide bonds · 1bdd330d
  Mark Friedrichs authored Mar 30, 2011
  
  1bdd330d
- Update to Amoeba chapter · 24214023
  Mark Friedrichs authored Mar 30, 2011
  
  24214023
- Update to Amoeba chapter · 6dd461c2
  Mark Friedrichs authored Mar 30, 2011
  
  6dd461c2
- Amoeba plugin update · ee3a1104
  Mark Friedrichs authored Mar 30, 2011
  
  ee3a1104
29 Mar, 2011 7 commits
- Update Amoeba chapter w/ benchmarks · 2e3c5dc9
  Mark Friedrichs authored Mar 29, 2011
  
  2e3c5dc9
- Cleanup · 74e2ca75
  Mark Friedrichs authored Mar 29, 2011
  
  74e2ca75
- Turn off logging · fff7aa03
  Mark Friedrichs authored Mar 29, 2011
  
  fff7aa03
- Output changed to 'Done' if test passes to be consistent w/ other OpenMM unit tests · b0cedd8a
  Mark Friedrichs authored Mar 29, 2011
  
  b0cedd8a
- Output changed to 'Done' if test passes to be consistent w/ other OpenMM unit tests · 4614fe27
  Mark Friedrichs authored Mar 29, 2011
  
  4614fe27
- Minor updates to the manual · 5ecd467a
  Peter Eastman authored Mar 29, 2011
  
  5ecd467a
- Turn off debugging code · 09ae36bd
  Mark Friedrichs authored Mar 29, 2011
  
  09ae36bd
28 Mar, 2011 1 commit
- Thread block sizes were initialized incorrectly · 0dd63d02
  Peter Eastman authored Mar 28, 2011
  
  0dd63d02
27 Mar, 2011 2 commits
- Temp fix for Vdw w/ cutoff · 8d3d9af0
  Mark Friedrichs authored Mar 27, 2011
  
  8d3d9af0
- Remove nonbondElectrostaticThreadsPerBlock, energyOutputBuffers · dd218599
  Mark Friedrichs authored Mar 27, 2011
```
Set nonbondThreadsPerBlock to gpu->sim.nonbond_threads_per_block
```
  dd218599
26 Mar, 2011 2 commits
- Update for Amoeba · 80ae6d45
  Mark Friedrichs authored Mar 26, 2011
  
  80ae6d45
- Added missing registerPlatforms() functions to plugins · c2fd9512
  Peter Eastman authored Mar 26, 2011
  
  c2fd9512
25 Mar, 2011 3 commits
- Fix for particles w/o multipole axis (e.g. ions) · 9298d000
  Mark Friedrichs authored Mar 25, 2011
```
-This line, and th -se below, will be ignored--

M    amoebaCudaGpu.cpp
M    kCalculateAmoebaCudaMapTorques.cu
M    kCalculateAmoebaCudaRotateFrame.cu
```
  9298d000
- Fix for particles w/o multipole axis (e.g. ions) · 29c09776
  Mark Friedrichs authored Mar 25, 2011
```
-This line, and th -se below, will be ignored--

M    AmoebaMultipoleForceImpl.cpp
```
  29c09776
- Fix for particles w/o multipole axis (e.g. ions) · b4fd8519
  Mark Friedrichs authored Mar 25, 2011
  
  b4fd8519
23 Mar, 2011 4 commits
- Update to benchmarks and Amoeba plugin documentation · adb5374a
  Mark Friedrichs authored Mar 23, 2011
  
  adb5374a
- Fixed some uninitialized pointers · 65c025a1
  Peter Eastman authored Mar 23, 2011
  
  65c025a1
- Minor updates to developer guide · 986d393c
  Peter Eastman authored Mar 23, 2011
  
  986d393c
- Cleaning up Python build process · 2c39cb5e
  Peter Eastman authored Mar 23, 2011
  
  2c39cb5e
22 Mar, 2011 6 commits
- Updated version number to 3.0 · 1a50d0c1
  Peter Eastman authored Mar 22, 2011
  
  1a50d0c1
- Filled in some gaps in the documentation on building from source · 7a77b377
  Peter Eastman authored Mar 22, 2011
  
  7a77b377
- Fix for wrapper flag · 0b77a95b
  Mark Friedrichs authored Mar 22, 2011
  
  0b77a95b
- Removed debugging code that accidentally got left in · c12bac04
  Peter Eastman authored Mar 22, 2011
  
  c12bac04
- Disabled compiler optimizations for integrator kernels, since they caused excessive error on Fermi · 017e60c5
  Peter Eastman authored Mar 22, 2011
  
  017e60c5
- Trying to use an Integrator for multiple Contexts produces an exception · 7d4b549d
  Peter Eastman authored Mar 22, 2011
  
  7d4b549d
21 Mar, 2011 3 commits
- Python System objects can be pickled · 2b475dd3
  Peter Eastman authored Mar 21, 2011
  
  2b475dd3
- Include files for gcc 4.3 · 1e063047
  Mark Friedrichs authored Mar 21, 2011
  
  1e063047
- Include files added for gcc 4.3 · 17ab416a
  Mark Friedrichs authored Mar 21, 2011
  
  17ab416a
18 Mar, 2011 4 commits
- Minor improvements to Doxygen comments · 524bf8cb
  Peter Eastman authored Mar 18, 2011
  
  524bf8cb
- Completed first draft of developer guide · a82ce984
  Peter Eastman authored Mar 18, 2011
  
  a82ce984
- Update · cef46630
  Mark Friedrichs authored Mar 18, 2011
  
  cef46630
- Intermediate update · 524e8434
  Mark Friedrichs authored Mar 18, 2011
  
  524e8434
17 Mar, 2011 1 commit
- Further cleanup to reference platform - mostly deleting lots of unnecessary "default return" values · 8086b201
  Peter Eastman authored Mar 17, 2011
  
  8086b201
16 Mar, 2011 2 commits
- Deleted lots of obsolete code · 51475608
  Peter Eastman authored Mar 16, 2011
  
  51475608
- Beginning of OpenMM Developer Guide · 398f0609
  Peter Eastman authored Mar 16, 2011
  
  398f0609
14 Mar, 2011 1 commit
- Further updates to the manual for 3.0 · 7a8c2fea
  Peter Eastman authored Mar 14, 2011
  
  7a8c2fea