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tsoc
openmm
Commits
f8f80693
Commit
f8f80693
authored
May 24, 2013
by
peastman
Browse files
Added DrudeSCFIntegrator to the Python wrappers
parent
112b1993
Changes
3
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3 changed files
with
42 additions
and
2 deletions
+42
-2
plugins/drude/openmmapi/include/OpenMMDrude.h
plugins/drude/openmmapi/include/OpenMMDrude.h
+39
-0
wrappers/python/src/swig_doxygen/OpenMM.i
wrappers/python/src/swig_doxygen/OpenMM.i
+1
-2
wrappers/python/src/swig_doxygen/swigInputConfig.py
wrappers/python/src/swig_doxygen/swigInputConfig.py
+2
-0
No files found.
plugins/drude/openmmapi/include/OpenMMDrude.h
0 → 100644
View file @
f8f80693
#ifndef OPENMM_DRUDE_H_
#define OPENMM_DRUDE_H_
/* -------------------------------------------------------------------------- *
* OpenMMDrude *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* Portions copyright (c) 2013 Stanford University and the Authors. *
* Authors: Peter Eastman *
* Contributors: *
* *
* Permission is hereby granted, free of charge, to any person obtaining a *
* copy of this software and associated documentation files (the "Software"), *
* to deal in the Software without restriction, including without limitation *
* the rights to use, copy, modify, merge, publish, distribute, sublicense, *
* and/or sell copies of the Software, and to permit persons to whom the *
* Software is furnished to do so, subject to the following conditions: *
* *
* The above copyright notice and this permission notice shall be included in *
* all copies or substantial portions of the Software. *
* *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
* THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
* DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
* OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
#include "openmm/DrudeForce.h"
#include "openmm/DrudeLangevinIntegrator.h"
#include "openmm/DrudeSCFIntegrator.h"
#endif
/*OPENMM_DRUDE_H_*/
wrappers/python/src/swig_doxygen/OpenMM.i
View file @
f8f80693
...
@@ -45,8 +45,7 @@ namespace std {
...
@@ -45,8 +45,7 @@ namespace std {
#
include
"OpenMM.h"
#
include
"OpenMM.h"
#
include
"OpenMMAmoeba.h"
#
include
"OpenMMAmoeba.h"
#
include
"openmm/RPMDIntegrator.h"
#
include
"openmm/RPMDIntegrator.h"
#
include
"openmm/DrudeForce.h"
#
include
"OpenMMDrude.h"
#
include
"openmm/DrudeLangevinIntegrator.h"
#
include
"openmm/serialization/SerializationNode.h"
#
include
"openmm/serialization/SerializationNode.h"
#
include
"openmm/serialization/SerializationProxy.h"
#
include
"openmm/serialization/SerializationProxy.h"
#
include
"openmm/serialization/XmlSerializer.h"
#
include
"openmm/serialization/XmlSerializer.h"
...
...
wrappers/python/src/swig_doxygen/swigInputConfig.py
View file @
f8f80693
...
@@ -141,6 +141,7 @@ SKIP_METHODS = [('State',),
...
@@ -141,6 +141,7 @@ SKIP_METHODS = [('State',),
(
'DrudeForceImpl'
,),
(
'DrudeForceImpl'
,),
(
'CalcDrudeForceKernel'
,),
(
'CalcDrudeForceKernel'
,),
(
'IntegrateDrudeLangevinStepKernel'
,),
(
'IntegrateDrudeLangevinStepKernel'
,),
(
'IntegrateDrudeSCFStepKernel'
,),
(
'XmlSerializer'
,
'serialize'
),
(
'XmlSerializer'
,
'serialize'
),
(
'XmlSerializer'
,
'deserialize'
),
(
'XmlSerializer'
,
'deserialize'
),
]
]
...
@@ -444,5 +445,6 @@ UNITS = {
...
@@ -444,5 +445,6 @@ UNITS = {
(
"System"
,
"getVirtualSite"
)
:
(
None
,
()),
(
"System"
,
"getVirtualSite"
)
:
(
None
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeFriction"
)
:
(
"1/unit.picosecond"
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeFriction"
)
:
(
"1/unit.picosecond"
,
()),
(
"DrudeSCFIntegrator"
,
"getMinimizationErrorTolerance"
)
:
(
"unit.kilojoules_per_mole/unit.nanometer"
,
()),
}
}
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