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tsoc
openmm
Commits
ce3a5dc0
Commit
ce3a5dc0
authored
Aug 25, 2016
by
Rafal P. Wiewiora
Browse files
fix for when ordering attribute not in PeriodicTorsionForce element
parent
aaf535b8
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1
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wrappers/python/simtk/openmm/app/forcefield.py
wrappers/python/simtk/openmm/app/forcefield.py
+4
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wrappers/python/simtk/openmm/app/forcefield.py
View file @
ce3a5dc0
...
@@ -1840,7 +1840,10 @@ class PeriodicTorsionGenerator(object):
...
@@ -1840,7 +1840,10 @@ class PeriodicTorsionGenerator(object):
for
torsion
in
element
.
findall
(
'Proper'
):
for
torsion
in
element
.
findall
(
'Proper'
):
generator
.
registerProperTorsion
(
torsion
.
attrib
)
generator
.
registerProperTorsion
(
torsion
.
attrib
)
for
torsion
in
element
.
findall
(
'Improper'
):
for
torsion
in
element
.
findall
(
'Improper'
):
generator
.
registerImproperTorsion
(
torsion
.
attrib
,
element
.
attrib
[
'ordering'
])
if
'ordering'
in
element
.
attrib
:
generator
.
registerImproperTorsion
(
torsion
.
attrib
,
element
.
attrib
[
'ordering'
])
else
:
generator
.
registerImproperTorsion
(
torsion
.
attrib
)
def
createForce
(
self
,
sys
,
data
,
nonbondedMethod
,
nonbondedCutoff
,
args
):
def
createForce
(
self
,
sys
,
data
,
nonbondedMethod
,
nonbondedCutoff
,
args
):
existing
=
[
sys
.
getForce
(
i
)
for
i
in
range
(
sys
.
getNumForces
())]
existing
=
[
sys
.
getForce
(
i
)
for
i
in
range
(
sys
.
getNumForces
())]
...
...
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