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tsoc
openmm
Commits
b90e80ff
Commit
b90e80ff
authored
Jan 07, 2011
by
Mark Friedrichs
Browse files
Renamed OpenMMAmoeba,h to AmoebaOpenMM for consistency w/ other plugin
parent
8928a337
Changes
89
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20 changed files
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20 additions
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20 deletions
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-20
plugins/amoeba/openmmapi/src/AmoebaTorsionForce.cpp
plugins/amoeba/openmmapi/src/AmoebaTorsionForce.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaTorsionForceImpl.cpp
plugins/amoeba/openmmapi/src/AmoebaTorsionForceImpl.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp
plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp
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-1
plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp
...ns/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForce.cpp
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForce.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForceImpl.cpp
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForceImpl.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp
plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp
plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp
plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp
+1
-1
plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp
...ins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp
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-1
plugins/amoeba/platforms/cuda/include/AmoebaCudaKernelFactory.h
...s/amoeba/platforms/cuda/include/AmoebaCudaKernelFactory.h
+1
-1
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.cpp
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.cpp
+1
-1
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.h
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.h
+1
-1
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp
...ins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp
+1
-1
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
+1
-1
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.h
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.h
+1
-1
plugins/amoeba/platforms/cuda/src/kernels/amoebaCudaGpu.cpp
plugins/amoeba/platforms/cuda/src/kernels/amoebaCudaGpu.cpp
+1
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plugins/amoeba/platforms/cuda/src/kernels/amoebaCudaKernels.h
...ins/amoeba/platforms/cuda/src/kernels/amoebaCudaKernels.h
+1
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plugins/amoeba/platforms/cuda/src/kernels/amoebaGpuTypes.h
plugins/amoeba/platforms/cuda/src/kernels/amoebaGpuTypes.h
+1
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plugins/amoeba/platforms/cuda/src/kernels/amoebaScaleFactors.h
...ns/amoeba/platforms/cuda/src/kernels/amoebaScaleFactors.h
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plugins/amoeba/openmmapi/src/AmoebaTorsionForce.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaTorsionForceImpl.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
* Amoeba
OpenMM
*
*
OpenMM
Amoeba *
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
* Amoeba
OpenMM
*
*
OpenMM
Amoeba *
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForce.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaUreyBradleyForceImpl.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
* OpenMM
*
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
* Amoeba
OpenMM
*
*
OpenMM
Amoeba *
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
AmoebaOpenMM
*
*
OpenMMAmoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
* Amoeba
OpenMM
*
*
OpenMM
Amoeba *
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/include/AmoebaCudaKernelFactory.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define AMOEBA_OPENMM_CUDAKERNELFACTORY_H_
#define AMOEBA_OPENMM_CUDAKERNELFACTORY_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/AmoebaCudaData.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define AMOEBA_CUDA_DATA_H_
#define AMOEBA_CUDA_DATA_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernelFactory.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define AMOEBA_OPENMM_CUDAKERNELS_H_
#define AMOEBA_OPENMM_CUDAKERNELS_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/kernels/amoebaCudaGpu.cpp
View file @
b90e80ff
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/kernels/amoebaCudaKernels.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define __AMOEBA_GPU_TYPES_H__
#define __AMOEBA_GPU_TYPES_H__
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/kernels/amoebaGpuTypes.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define __AMOEBA_GPUTYPES_H__
#define __AMOEBA_GPUTYPES_H__
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/platforms/cuda/src/kernels/amoebaScaleFactors.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define __AMOEBA_SCALE_FACTORS_H__
#define __AMOEBA_SCALE_FACTORS_H__
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
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