Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
tsoc
openmm
Commits
a6eccd99
"...OpenDAS/text-generation-inference.git" did not exist on "87f43814e3a026b6df603efdc309357543c52632"
Commit
a6eccd99
authored
Aug 10, 2015
by
Jason Swails
Browse files
Fix unit cell writing in PDBx/mmCIF files.
parent
4db8f48c
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
6 additions
and
6 deletions
+6
-6
wrappers/python/simtk/openmm/app/pdbxfile.py
wrappers/python/simtk/openmm/app/pdbxfile.py
+6
-6
No files found.
wrappers/python/simtk/openmm/app/pdbxfile.py
View file @
a6eccd99
...
@@ -240,12 +240,12 @@ class PDBxFile(object):
...
@@ -240,12 +240,12 @@ class PDBxFile(object):
if
vectors
is
not
None
:
if
vectors
is
not
None
:
a
,
b
,
c
,
alpha
,
beta
,
gamma
=
computeLengthsAndAngles
(
vectors
)
a
,
b
,
c
,
alpha
,
beta
,
gamma
=
computeLengthsAndAngles
(
vectors
)
RAD_TO_DEG
=
180
/
math
.
pi
RAD_TO_DEG
=
180
/
math
.
pi
print
(
'_cell.length_a %10.4f'
%
a
_length
*
10
,
file
=
file
)
print
(
'_cell.length_a %10.4f'
%
(
a
*
10
)
,
file
=
file
)
print
(
'_cell.length_b %10.4f'
%
b
_length
*
10
,
file
=
file
)
print
(
'_cell.length_b %10.4f'
%
(
b
*
10
)
,
file
=
file
)
print
(
'_cell.length_c %10.4f'
%
c
_length
*
10
,
file
=
file
)
print
(
'_cell.length_c %10.4f'
%
(
c
*
10
)
,
file
=
file
)
print
(
'_cell.angle_alpha %10.4f'
%
alpha
*
RAD_TO_DEG
,
file
=
file
)
print
(
'_cell.angle_alpha %10.4f'
%
(
alpha
*
RAD_TO_DEG
)
,
file
=
file
)
print
(
'_cell.angle_beta %10.4f'
%
beta
*
RAD_TO_DEG
,
file
=
file
)
print
(
'_cell.angle_beta %10.4f'
%
(
beta
*
RAD_TO_DEG
)
,
file
=
file
)
print
(
'_cell.angle_gamma %10.4f'
%
gamma
*
RAD_TO_DEG
,
file
=
file
)
print
(
'_cell.angle_gamma %10.4f'
%
(
gamma
*
RAD_TO_DEG
)
,
file
=
file
)
print
(
'##'
,
file
=
file
)
print
(
'##'
,
file
=
file
)
print
(
'loop_'
,
file
=
file
)
print
(
'loop_'
,
file
=
file
)
print
(
'_atom_site.group_PDB'
,
file
=
file
)
print
(
'_atom_site.group_PDB'
,
file
=
file
)
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment