Added index bounds checking to lots of methods

platforms/cuda/tests/TestCudaRBTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of RBTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/RBTorsionForce.h"

platforms/cuda/tests/TestCudaRandom.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of random number generation.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "../src/kernels/gputypes.h"
 #include "../src/kernels/cudaKernels.h"
 #include <iostream>

platforms/cuda/tests/TestCudaSettle.cpp

@@ -34,7 +34,7 @@
  * This tests the Cuda implementation of the SETTLE algorithm.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/NonbondedForce.h"

platforms/cuda/tests/TestCudaVariableLangevinIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the CUDA implementation of VariableLangevinIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaVariableVerletIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of VariableVerletIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaVerletIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of VerletIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TstCudaUsingParameterFile.cpp

@@ -32,7 +32,7 @@
  * 
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "CudaPlatform.h"
 #include "../../../platforms/opencl/include/OpenCLPlatform.h"
 #include "ReferencePlatform.h"

platforms/opencl/tests/TestOpenCLAndersenThermostat.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of AndersenThermostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/AndersenThermostat.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"

platforms/opencl/tests/TestOpenCLBrownianIntegrator.cpp

@@ -36,7 +36,7 @@
  * This tests the OpenCL implementation of BrownianIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/opencl/tests/TestOpenCLCMAPTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CMAPTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CMAPTorsionForce.h"

platforms/opencl/tests/TestOpenCLCMMotionRemover.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of AndersenThermostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CMMotionRemover.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"

platforms/opencl/tests/TestOpenCLCustomAngleForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CustomAngleForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomAngleForce.h"

platforms/opencl/tests/TestOpenCLCustomBondForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CustomBondForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomBondForce.h"

platforms/opencl/tests/TestOpenCLCustomExternalForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CustomExternalForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomExternalForce.h"

platforms/opencl/tests/TestOpenCLCustomGBForce.cpp

@@ -34,7 +34,7 @@
  * This tests the OpenCL implementation of CustomGBForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "sfmt/SFMT.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"

platforms/opencl/tests/TestOpenCLCustomHbondForce.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CustomHbondForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomHbondForce.h"

platforms/opencl/tests/TestOpenCLCustomIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the OpenCL implementation of CustomIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/AndersenThermostat.h"

platforms/opencl/tests/TestOpenCLCustomNonbondedForce.cpp

@@ -34,7 +34,7 @@
  * This tests all the different force terms in the OpenCL implementation of CustomNonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "sfmt/SFMT.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"

platforms/opencl/tests/TestOpenCLCustomTorsionForce.cpp

@@ -36,7 +36,7 @@
 #ifdef WIN32
   #define _USE_MATH_DEFINES // Needed to get M_PI
 #endif
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "openmm/CustomTorsionForce.h"

platforms/opencl/tests/TestOpenCLEwald.cpp

@@ -33,7 +33,7 @@
  * This tests the Ewald summation method OpenCL implementation of NonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "OpenCLPlatform.h"
 #include "ReferencePlatform.h"