Added index bounds checking to lots of methods

platforms/cuda/tests/TestCudaAndersenThermostat.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of AndersenThermostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/AndersenThermostat.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"

platforms/cuda/tests/TestCudaBrownianIntegrator.cpp

@@ -36,7 +36,7 @@
  * This tests the Cuda implementation of BrownianIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaCMAPTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of CMAPTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/CMAPTorsionForce.h"

platforms/cuda/tests/TestCudaCMMotionRemover.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of AndersenThermostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/CMMotionRemover.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"

platforms/cuda/tests/TestCudaCustomAngleForce.cpp

@@ -33,7 +33,7 @@
  * This tests the CUDA implementation of CustomAngleForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/CustomAngleForce.h"

platforms/cuda/tests/TestCudaCustomBondForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of CustomBondForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/CustomBondForce.h"

platforms/cuda/tests/TestCudaCustomExternalForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of CustomExternalForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/CustomExternalForce.h"

platforms/cuda/tests/TestCudaCustomNonbondedForce.cpp

@@ -34,7 +34,7 @@
  * This tests all the different force terms in the Cuda implementation of CustomNonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "sfmt/SFMT.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"

platforms/cuda/tests/TestCudaCustomTorsionForce.cpp

@@ -36,7 +36,7 @@
 #ifdef WIN32
   #define _USE_MATH_DEFINES // Needed to get M_PI
 #endif
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/CustomTorsionForce.h"

platforms/cuda/tests/TestCudaEwald.cpp

@@ -33,7 +33,7 @@
  * This tests the Ewald summation method cuda implementation of NonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "ReferencePlatform.h"

platforms/cuda/tests/TestCudaGBSAOBCForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of GBSAOBCForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "ReferencePlatform.h"

platforms/cuda/tests/TestCudaGBVIForce.cpp

@@ -33,7 +33,7 @@
  * This tests the reference implementation of GBVIForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "ReferencePlatform.h"
 #include "CudaPlatform.h"

platforms/cuda/tests/TestCudaGBVIForce2.cpp

@@ -55,7 +55,7 @@
  * Utility methods shared across unit tests
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "openmm/System.h"
 #include "../src/SimTKUtilities/SimTKOpenMMRealType.h"

platforms/cuda/tests/TestCudaHarmonicAngleForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of HarmonicAngleForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicAngleForce.h"

platforms/cuda/tests/TestCudaHarmonicBondForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of HarmonicBondForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaLangevinIntegrator.cpp

@@ -33,7 +33,7 @@
  * This tests the reference implementation of LangevinIntegrator.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaLocalEnergyMinimizer.cpp

@@ -30,7 +30,7 @@
  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
  * -------------------------------------------------------------------------- */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "CudaPlatform.h"
 #include "openmm/Context.h"
 #include "openmm/HarmonicBondForce.h"

platforms/cuda/tests/TestCudaMonteCarloBarostat.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of MonteCarloBarostat.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/MonteCarloBarostat.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"

platforms/cuda/tests/TestCudaNonbondedForce.cpp

@@ -33,7 +33,7 @@
  * This tests all the different force terms in the reference implementation of NonbondedForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "ReferencePlatform.h"

platforms/cuda/tests/TestCudaPeriodicTorsionForce.cpp

@@ -33,7 +33,7 @@
  * This tests the Cuda implementation of PeriodicTorsionForce.
  */
 
-#include "../../../tests/AssertionUtilities.h"
+#include "openmm/internal/AssertionUtilities.h"
 #include "openmm/Context.h"
 #include "CudaPlatform.h"
 #include "openmm/PeriodicTorsionForce.h"