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tsoc
openmm
Commits
92727186
Commit
92727186
authored
Mar 19, 2015
by
peastman
Browse files
Fixed an error in doxygen comments
parent
2762adf4
Changes
23
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20 changed files
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20 additions
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20 deletions
+20
-20
openmmapi/include/openmm/CustomAngleForce.h
openmmapi/include/openmm/CustomAngleForce.h
+1
-1
openmmapi/include/openmm/CustomBondForce.h
openmmapi/include/openmm/CustomBondForce.h
+1
-1
openmmapi/include/openmm/CustomCompoundBondForce.h
openmmapi/include/openmm/CustomCompoundBondForce.h
+1
-1
openmmapi/include/openmm/CustomExternalForce.h
openmmapi/include/openmm/CustomExternalForce.h
+1
-1
openmmapi/include/openmm/CustomGBForce.h
openmmapi/include/openmm/CustomGBForce.h
+1
-1
openmmapi/include/openmm/CustomHbondForce.h
openmmapi/include/openmm/CustomHbondForce.h
+1
-1
openmmapi/include/openmm/CustomTorsionForce.h
openmmapi/include/openmm/CustomTorsionForce.h
+1
-1
openmmapi/include/openmm/GBSAOBCForce.h
openmmapi/include/openmm/GBSAOBCForce.h
+1
-1
openmmapi/include/openmm/HarmonicAngleForce.h
openmmapi/include/openmm/HarmonicAngleForce.h
+1
-1
openmmapi/include/openmm/HarmonicBondForce.h
openmmapi/include/openmm/HarmonicBondForce.h
+1
-1
openmmapi/include/openmm/NonbondedForce.h
openmmapi/include/openmm/NonbondedForce.h
+1
-1
openmmapi/include/openmm/PeriodicTorsionForce.h
openmmapi/include/openmm/PeriodicTorsionForce.h
+1
-1
openmmapi/include/openmm/RBTorsionForce.h
openmmapi/include/openmm/RBTorsionForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h
plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h
plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h
...openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h
...amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
...ns/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
...oeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
...ns/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
+1
-1
No files found.
openmmapi/include/openmm/CustomAngleForce.h
View file @
92727186
...
@@ -194,7 +194,7 @@ public:
...
@@ -194,7 +194,7 @@ public:
/**
/**
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-angle parameters.
* This method has several limitations. The only information it updates is the values of per-angle parameters.
...
...
openmmapi/include/openmm/CustomBondForce.h
View file @
92727186
...
@@ -191,7 +191,7 @@ public:
...
@@ -191,7 +191,7 @@ public:
/**
/**
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-bond parameters.
* This method has several limitations. The only information it updates is the values of per-bond parameters.
...
...
openmmapi/include/openmm/CustomCompoundBondForce.h
View file @
92727186
...
@@ -289,7 +289,7 @@ public:
...
@@ -289,7 +289,7 @@ public:
/**
/**
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-bond parameters.
* This method has several limitations. The only information it updates is the values of per-bond parameters.
...
...
openmmapi/include/openmm/CustomExternalForce.h
View file @
92727186
...
@@ -191,7 +191,7 @@ public:
...
@@ -191,7 +191,7 @@ public:
/**
/**
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-particle parameters.
* This method has several limitations. The only information it updates is the values of per-particle parameters.
...
...
openmmapi/include/openmm/CustomGBForce.h
View file @
92727186
...
@@ -515,7 +515,7 @@ public:
...
@@ -515,7 +515,7 @@ public:
/**
/**
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-particle parameters.
* This method has several limitations. The only information it updates is the values of per-particle parameters.
...
...
openmmapi/include/openmm/CustomHbondForce.h
View file @
92727186
...
@@ -435,7 +435,7 @@ public:
...
@@ -435,7 +435,7 @@ public:
* Update the per-donor and per-acceptor parameters in a Context to match those stored in this Force object. This method
* Update the per-donor and per-acceptor parameters in a Context to match those stored in this Force object. This method
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setDonorParameters() and setAcceptorParameters() to modify this object's parameters, then call
* Simply call setDonorParameters() and setAcceptorParameters() to modify this object's parameters, then call
* updateParametersIn
State
() to copy them over to the Context.
* updateParametersIn
Context
() to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-donor and per-acceptor parameters.
* This method has several limitations. The only information it updates is the values of per-donor and per-acceptor parameters.
* All other aspects of the Force (the energy function, nonbonded method, cutoff distance, etc.) are unaffected and can only
* All other aspects of the Force (the energy function, nonbonded method, cutoff distance, etc.) are unaffected and can only
...
...
openmmapi/include/openmm/CustomTorsionForce.h
View file @
92727186
...
@@ -197,7 +197,7 @@ public:
...
@@ -197,7 +197,7 @@ public:
/**
/**
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the values of per-torsion parameters.
* This method has several limitations. The only information it updates is the values of per-torsion parameters.
...
...
openmmapi/include/openmm/GBSAOBCForce.h
View file @
92727186
...
@@ -176,7 +176,7 @@ public:
...
@@ -176,7 +176,7 @@ public:
* Update the particle parameters in a Context to match those stored in this Force object. This method
* Update the particle parameters in a Context to match those stored in this Force object. This method
* provides an efficient method to update certain parameters in an existing Context without needing to
* provides an efficient method to update certain parameters in an existing Context without needing to
* reinitialize it. Simply call setParticleParameters() to modify this object's parameters, then call
* reinitialize it. Simply call setParticleParameters() to modify this object's parameters, then call
* updateParametersIn
State
() to copy them over to the Context.
* updateParametersIn
Context
() to copy them over to the Context.
*
*
* The only information this method updates is the values of per-particle parameters. All other aspects
* The only information this method updates is the values of per-particle parameters. All other aspects
* of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be changed
* of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be changed
...
...
openmmapi/include/openmm/HarmonicAngleForce.h
View file @
92727186
...
@@ -95,7 +95,7 @@ public:
...
@@ -95,7 +95,7 @@ public:
/**
/**
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-angle parameters. The set of particles involved
* The only information this method updates is the values of per-angle parameters. The set of particles involved
...
...
openmmapi/include/openmm/HarmonicBondForce.h
View file @
92727186
...
@@ -92,7 +92,7 @@ public:
...
@@ -92,7 +92,7 @@ public:
/**
/**
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-bond parameters. The set of particles involved
* The only information this method updates is the values of per-bond parameters. The set of particles involved
...
...
openmmapi/include/openmm/NonbondedForce.h
View file @
92727186
...
@@ -343,7 +343,7 @@ public:
...
@@ -343,7 +343,7 @@ public:
* Update the particle and exception parameters in a Context to match those stored in this Force object. This method
* Update the particle and exception parameters in a Context to match those stored in this Force object. This method
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setParticleParameters() and setExceptionParameters() to modify this object's parameters, then call
* Simply call setParticleParameters() and setExceptionParameters() to modify this object's parameters, then call
* updateParametersIn
State
() to copy them over to the Context.
* updateParametersIn
Context
() to copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the parameters of particles and exceptions.
* This method has several limitations. The only information it updates is the parameters of particles and exceptions.
* All other aspects of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be
* All other aspects of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be
...
...
openmmapi/include/openmm/PeriodicTorsionForce.h
View file @
92727186
...
@@ -101,7 +101,7 @@ public:
...
@@ -101,7 +101,7 @@ public:
/**
/**
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
...
...
openmmapi/include/openmm/RBTorsionForce.h
View file @
92727186
...
@@ -110,7 +110,7 @@ public:
...
@@ -110,7 +110,7 @@ public:
/**
/**
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h
View file @
92727186
...
@@ -159,7 +159,7 @@ public:
...
@@ -159,7 +159,7 @@ public:
/**
/**
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-angle parameters. The set of particles involved
* The only information this method updates is the values of per-angle parameters. The set of particles involved
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h
View file @
92727186
...
@@ -131,7 +131,7 @@ public:
...
@@ -131,7 +131,7 @@ public:
/**
/**
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* Update the per-bond parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setBondParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-bond parameters. The set of particles involved
* The only information this method updates is the values of per-bond parameters. The set of particles involved
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h
View file @
92727186
...
@@ -156,7 +156,7 @@ public:
...
@@ -156,7 +156,7 @@ public:
/**
/**
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-particle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setParticleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-particle parameters. All other aspects of the Force
* The only information this method updates is the values of per-particle parameters. All other aspects of the Force
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h
View file @
92727186
...
@@ -164,7 +164,7 @@ public:
...
@@ -164,7 +164,7 @@ public:
/**
/**
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* Update the per-angle parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setAngleParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-angle parameters. The set of particles involved
* The only information this method updates is the values of per-angle parameters. The set of particles involved
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
View file @
92727186
...
@@ -340,7 +340,7 @@ public:
...
@@ -340,7 +340,7 @@ public:
/**
/**
* Update the multipole parameters in a Context to match those stored in this Force object. This method
* Update the multipole parameters in a Context to match those stored in this Force object. This method
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setMultipoleParameters() to modify this object's parameters, then call updateParametersIn
State
() to
* Simply call setMultipoleParameters() to modify this object's parameters, then call updateParametersIn
Context
() to
* copy them over to the Context.
* copy them over to the Context.
*
*
* This method has several limitations. The only information it updates is the parameters of multipoles.
* This method has several limitations. The only information it updates is the parameters of multipoles.
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
View file @
92727186
...
@@ -156,7 +156,7 @@ public:
...
@@ -156,7 +156,7 @@ public:
/**
/**
* Update the per-bend term parameters in a Context to match those stored in this Force object. This method provides
* Update the per-bend term parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setOutOfPlaneBendParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setOutOfPlaneBendParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-bend term parameters. The set of particles involved
* The only information this method updates is the values of per-bend term parameters. The set of particles involved
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
View file @
92727186
...
@@ -106,7 +106,7 @@ public:
...
@@ -106,7 +106,7 @@ public:
/**
/**
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* Update the per-torsion parameters in a Context to match those stored in this Force object. This method provides
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
* Simply call setPiTorsionParameters() to modify this object's parameters, then call updateParametersIn
State
()
* Simply call setPiTorsionParameters() to modify this object's parameters, then call updateParametersIn
Context
()
* to copy them over to the Context.
* to copy them over to the Context.
*
*
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
* The only information this method updates is the values of per-torsion parameters. The set of particles involved
...
...
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