Moved reference platform classes into OpenMM namespace

platforms/cpu/include/CpuLangevinDynamics.h

@@ -31,7 +31,7 @@
 #include "openmm/internal/ThreadPool.h"
 #include "sfmt/SFMT.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class CpuLangevinDynamics : public ReferenceStochasticDynamics {
 public:
@@ -95,6 +95,6 @@ private:
     OpenMM::RealVec* xPrime;
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __CPU_LANGEVIN_DYNAMICS_H__

platforms/reference/include/CpuGBVI.h

@@ -30,7 +30,7 @@
 #include "RealVec.h"
 #include "GBVIParameters.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class CpuGBVI {
 
@@ -311,6 +311,6 @@ class CpuGBVI {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __CpuGBVI_H__

platforms/reference/include/CpuObc.h

@@ -27,7 +27,7 @@
 
 #include "ObcParameters.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class CpuObc {
 
@@ -181,6 +181,6 @@ class CpuObc {
     
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __CpuObc_H__

platforms/reference/include/GBVIParameters.h

@@ -27,7 +27,7 @@
 
 #include "SimTKOpenMMCommon.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class GBVIParameters {
 
@@ -337,5 +337,7 @@ class GBVIParameters {
     void setQuinticUpperBornRadiusLimit( RealOpenMM quinticUpperSplineLimit );
 
 };
-   
+
+} // namespace OpenMM
+
 #endif // __GBVIParameters_H__

platforms/reference/include/ObcParameters.h

@@ -27,7 +27,7 @@
 
 #include "SimTKOpenMMCommon.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ObcParameters {
 
@@ -352,7 +352,7 @@ class ObcParameters {
       const OpenMM::RealVec* getPeriodicBox();
 
 };
-   
-// ---------------------------------------------------------------------------------------
+
+} // namespace OpenMM
 
 #endif // __ObcParameters_H__

platforms/reference/include/ReferenceAndersenThermostat.h

@@ -28,7 +28,7 @@
 #include "SimTKOpenMMCommon.h"
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceAndersenThermostat {
 
@@ -70,6 +70,6 @@ class ReferenceAndersenThermostat {
       
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceAndersenThermostat_H__

platforms/reference/include/ReferenceAngleBondIxn.h

@@ -27,7 +27,7 @@
 
 #include "ReferenceBondIxn.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceAngleBondIxn : public ReferenceBondIxn {
 
@@ -86,6 +86,6 @@ class ReferenceAngleBondIxn : public ReferenceBondIxn {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceAngleBondIxn_H__

platforms/reference/include/ReferenceBondForce.h

@@ -28,7 +28,7 @@
 #include "ReferenceForce.h"
 #include "ReferenceBondIxn.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class OPENMM_EXPORT ReferenceBondForce : public ReferenceForce {
 
@@ -74,6 +74,6 @@ class OPENMM_EXPORT ReferenceBondForce : public ReferenceForce {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceBondForce_H__

platforms/reference/include/ReferenceBondIxn.h

@@ -29,7 +29,7 @@
 #include "openmm/internal/windowsExport.h"
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class OPENMM_EXPORT ReferenceBondIxn {
 
@@ -126,6 +126,6 @@ class OPENMM_EXPORT ReferenceBondIxn {
       
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceBondIxn_H__

platforms/reference/include/ReferenceBrownianDynamics.h

@@ -27,7 +27,7 @@
 
 #include "ReferenceDynamics.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceBrownianDynamics : public ReferenceDynamics {
 
@@ -88,6 +88,6 @@ class ReferenceBrownianDynamics : public ReferenceDynamics {
       
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceBrownianDynamics_H__

platforms/reference/include/ReferenceCCMAAlgorithm.h

@@ -30,7 +30,7 @@
 #include <vector>
 #include <set>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class OPENMM_EXPORT ReferenceCCMAAlgorithm : public ReferenceConstraintAlgorithm {
 
@@ -120,6 +120,6 @@ public:
     }
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceCCMAAlgorithm_H__

platforms/reference/include/ReferenceCMAPTorsionIxn.h

@@ -30,7 +30,7 @@
 #include "ReferenceBondIxn.h"
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCMAPTorsionIxn : public ReferenceBondIxn {
 
@@ -92,4 +92,6 @@ public:
 
 };
 
+} // namespace OpenMM
+
 #endif // __ReferenceCMAPTorsionIxn_H__

platforms/reference/include/ReferenceConstraintAlgorithm.h

@@ -28,6 +28,8 @@
 #include "SimTKOpenMMCommon.h"
 #include "openmm/internal/windowsExport.h"
 
+namespace OpenMM {
+
 /**
  * This abstract class defines the interface which constraint algorithms must implement.
  */
@@ -59,6 +61,6 @@ public:
                      std::vector<OpenMM::RealVec>& velocities, std::vector<RealOpenMM>& inverseMasses, RealOpenMM tolerance) = 0;
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceConstraintAlgorithm_H__

platforms/reference/include/ReferenceCustomAngleIxn.h

@@ -27,7 +27,7 @@
 #include "ReferenceBondIxn.h"
 #include "lepton/CompiledExpression.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomAngleIxn : public ReferenceBondIxn {
 
@@ -78,6 +78,6 @@ class ReferenceCustomAngleIxn : public ReferenceBondIxn {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // _ReferenceCustomAngleIxn___

platforms/reference/include/ReferenceCustomBondIxn.h

@@ -28,7 +28,7 @@
 #include "ReferenceBondIxn.h"
 #include "lepton/CompiledExpression.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomBondIxn : public ReferenceBondIxn {
 
@@ -79,6 +79,6 @@ class ReferenceCustomBondIxn : public ReferenceBondIxn {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // _ReferenceCustomBondIxn___

platforms/reference/include/ReferenceCustomCompoundBondIxn.h

@@ -31,7 +31,7 @@
 #include <map>
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomCompoundBondIxn : public ReferenceBondIxn {
 
@@ -169,4 +169,6 @@ public:
     }
 };
 
+} // namespace OpenMM
+
 #endif // __ReferenceCustomCompoundBondIxn_H__

platforms/reference/include/ReferenceCustomDynamics.h

@@ -34,7 +34,7 @@
 #include <string>
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomDynamics : public ReferenceDynamics {
 private:
@@ -121,6 +121,6 @@ public:
                                    std::map<std::string, RealOpenMM>& globals, std::vector<std::vector<OpenMM::RealVec> >& perDof, bool& forcesAreValid);
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // __ReferenceCustomDynamics_H__

platforms/reference/include/ReferenceCustomExternalIxn.h

@@ -28,7 +28,7 @@
 #include "ReferenceCustomExternalIxn.h"
 #include "lepton/CompiledExpression.h"
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomExternalIxn {
 
@@ -85,6 +85,6 @@ class ReferenceCustomExternalIxn {
 
 };
 
-// ---------------------------------------------------------------------------------------
+} // namespace OpenMM
 
 #endif // _ReferenceCustomBondIxn___

platforms/reference/include/ReferenceCustomGBIxn.h

@@ -32,7 +32,7 @@
 #include <set>
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomGBIxn {
 
@@ -290,4 +290,6 @@ class ReferenceCustomGBIxn {
 
 };
 
+} // namespace OpenMM
+
 #endif // __ReferenceCustomGBIxn_H__

platforms/reference/include/ReferenceCustomHbondIxn.h

@@ -32,7 +32,7 @@
 #include <set>
 #include <vector>
 
-// ---------------------------------------------------------------------------------------
+namespace OpenMM {
 
 class ReferenceCustomHbondIxn : public ReferenceBondIxn {
 
@@ -198,4 +198,6 @@ public:
     }
 };
 
+} // namespace OpenMM
+
 #endif // __ReferenceCustomHbondIxn_H__