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tsoc
openmm
Commits
84a93cf8
Unverified
Commit
84a93cf8
authored
Feb 06, 2021
by
Peter Eastman
Committed by
GitHub
Feb 06, 2021
Browse files
Improved units checking for function arguments (#3010)
parent
ac67d179
Changes
1
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Showing
1 changed file
with
81 additions
and
48 deletions
+81
-48
wrappers/python/src/swig_doxygen/swigInputConfig.py
wrappers/python/src/swig_doxygen/swigInputConfig.py
+81
-48
No files found.
wrappers/python/src/swig_doxygen/swigInputConfig.py
View file @
84a93cf8
...
@@ -168,10 +168,13 @@ REQUIRE_ORDERED_SET = {("CustomNonbondedForce", "addInteractionGroup") : [0, 1],
...
@@ -168,10 +168,13 @@ REQUIRE_ORDERED_SET = {("CustomNonbondedForce", "addInteractionGroup") : [0, 1],
UNITS
=
{
UNITS
=
{
(
"*"
,
"getConstraintTolerance"
)
:
(
None
,
()),
(
"*"
,
"getConstraintTolerance"
)
:
(
None
,
()),
(
"*"
,
"getCutoffDistance"
)
:
(
"unit.nanometers"
,
()),
(
"*"
,
"getCutoffDistance"
)
:
(
"unit.nanometers"
,
()),
(
"*"
,
"setCutoffDistance"
)
:
(
None
,
(
"unit.nanometers"
,)),
(
"*"
,
"getSwitchingDistance"
)
:
(
"unit.nanometers"
,
()),
(
"*"
,
"getSwitchingDistance"
)
:
(
"unit.nanometers"
,
()),
(
"*"
,
"getDefaultCollisionFrequency"
)
:
(
"1/unit.picosecond"
,
()),
(
"*"
,
"setSwitchingDistance"
)
:
(
None
,
(
"unit.nanometers"
,)),
(
"*"
,
"getDefaultPeriodicBoxVectors"
)
(
"*"
,
"getDefaultCollisionFrequency"
)
:
(
"unit.picosecond**-1"
,
()),
:
(
None
,
(
'unit.nanometer'
,
'unit.nanometer'
,
'unit.nanometer'
)),
(
"*"
,
"setDefaultCollisionFrequency"
)
:
(
None
,
(
"unit.picosecond**-1"
,)),
(
"*"
,
"getDefaultPeriodicBoxVectors"
)
:
(
None
,
(
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
)),
(
"*"
,
"setDefaultPeriodicBoxVectors"
)
:
(
None
,
(
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
)),
(
"*"
,
"getDefaultPressure"
)
:
(
"unit.bar"
,
()),
(
"*"
,
"getDefaultPressure"
)
:
(
"unit.bar"
,
()),
(
"*"
,
"getDefaultPressureX"
)
:
(
"unit.bar"
,
()),
(
"*"
,
"getDefaultPressureX"
)
:
(
"unit.bar"
,
()),
(
"*"
,
"getDefaultPressureY"
)
:
(
"unit.bar"
,
()),
(
"*"
,
"getDefaultPressureY"
)
:
(
"unit.bar"
,
()),
...
@@ -187,7 +190,8 @@ UNITS = {
...
@@ -187,7 +190,8 @@ UNITS = {
(
"*"
,
"getRelativeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"*"
,
"getRelativeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"*"
,
"getErrorTolerance"
)
:
(
None
,
()),
(
"*"
,
"getErrorTolerance"
)
:
(
None
,
()),
(
"*"
,
"getEwaldErrorTolerance"
)
:
(
None
,
()),
(
"*"
,
"getEwaldErrorTolerance"
)
:
(
None
,
()),
(
"*"
,
"getFriction"
)
:
(
"1/unit.picosecond"
,
()),
(
"*"
,
"getFriction"
)
:
(
"unit.picosecond**-1"
,
()),
(
"*"
,
"setFriction"
)
:
(
None
,
(
"unit.picosecond**-1"
,)),
(
"*"
,
"getGlobalVariable"
)
:
(
None
,
()),
(
"*"
,
"getGlobalVariable"
)
:
(
None
,
()),
(
"*"
,
"getGlobalVariableByName"
)
:
(
None
,
()),
(
"*"
,
"getGlobalVariableByName"
)
:
(
None
,
()),
(
"*"
,
"getIntegrator"
)
:
(
None
,
()),
(
"*"
,
"getIntegrator"
)
:
(
None
,
()),
...
@@ -205,6 +209,7 @@ UNITS = {
...
@@ -205,6 +209,7 @@ UNITS = {
(
"*"
,
"getNumTorsions"
)
:
(
None
,
()),
(
"*"
,
"getNumTorsions"
)
:
(
None
,
()),
(
"*"
,
"getOpenMMVersion"
)
:
(
None
,
()),
(
"*"
,
"getOpenMMVersion"
)
:
(
None
,
()),
(
"*"
,
"getParticleMass"
)
:
(
"unit.amu"
,
()),
(
"*"
,
"getParticleMass"
)
:
(
"unit.amu"
,
()),
(
"*"
,
"setParticleMass"
)
:
(
None
,
(
None
,
"unit.amu"
)),
(
"*"
,
"getPlatform"
)
:
(
None
,
()),
(
"*"
,
"getPlatform"
)
:
(
None
,
()),
(
"*"
,
"getPlatformByName"
)
:
(
None
,
()),
(
"*"
,
"getPlatformByName"
)
:
(
None
,
()),
(
"*"
,
"getPluginLoadFailures"
):
(
None
,
()),
(
"*"
,
"getPluginLoadFailures"
):
(
None
,
()),
...
@@ -213,14 +218,15 @@ UNITS = {
...
@@ -213,14 +218,15 @@ UNITS = {
(
"*"
,
"getSoluteDielectric"
)
:
(
None
,
()),
(
"*"
,
"getSoluteDielectric"
)
:
(
None
,
()),
(
"*"
,
"getSolventDielectric"
)
:
(
None
,
()),
(
"*"
,
"getSolventDielectric"
)
:
(
None
,
()),
(
"*"
,
"getStepSize"
)
:
(
"unit.picosecond"
,
()),
(
"*"
,
"getStepSize"
)
:
(
"unit.picosecond"
,
()),
(
"*"
,
"setStepSize"
)
:
(
None
,
(
"unit.picosecond"
,)),
(
"*"
,
"getMaximumStepSize"
)
:
(
"unit.picosecond"
,
()),
(
"*"
,
"getMaximumStepSize"
)
:
(
"unit.picosecond"
,
()),
(
"*"
,
"setMaximumStepSize"
)
:
(
None
,
(
"unit.picosecond"
,)),
(
"*"
,
"getSystem"
)
:
(
None
,
()),
(
"*"
,
"getSystem"
)
:
(
None
,
()),
(
"*"
,
"getTabulatedFunction"
)
:
(
None
,
()),
(
"*"
,
"getTabulatedFunction"
)
:
(
None
,
()),
(
"*"
,
"getUseDispersionCorrection"
)
:
(
None
,
()),
(
"*"
,
"getUseDispersionCorrection"
)
:
(
None
,
()),
(
"*"
,
"getTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"*"
,
"getTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"*"
,
"getRelativeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"*"
,
"getCollisionFrequency"
)
:
(
"unit.picosecond**-1"
,
()),
(
"*"
,
"getCollisionFrequency"
)
:
(
"1/unit.picosecond"
,
()),
(
"*"
,
"getRelativeCollisionFrequency"
)
:
(
"unit.picosecond**-1"
,
()),
(
"*"
,
"getRelativeCollisionFrequency"
)
:
(
"1/unit.picosecond"
,
()),
(
"*"
,
"getUseDispersionCorrection"
)
:
(
None
,
()),
(
"*"
,
"getUseDispersionCorrection"
)
:
(
None
,
()),
(
"*"
,
"getWeight"
)
:
(
None
,
()),
(
"*"
,
"getWeight"
)
:
(
None
,
()),
(
"*"
,
"getWeight12"
)
:
(
None
,
()),
(
"*"
,
"getWeight12"
)
:
(
None
,
()),
...
@@ -355,7 +361,12 @@ UNITS = {
...
@@ -355,7 +361,12 @@ UNITS = {
(
"Context"
,
"getParameters"
)
:
(
None
,
()),
(
"Context"
,
"getParameters"
)
:
(
None
,
()),
(
"Context"
,
"getMolecules"
)
:
(
None
,
()),
(
"Context"
,
"getMolecules"
)
:
(
None
,
()),
(
"Context"
,
"getState"
)
:
(
None
,
(
None
,
None
,
None
)),
(
"Context"
,
"getState"
)
:
(
None
,
(
None
,
None
,
None
)),
(
"CMAPTorsionForce"
,
"getMapParameters"
)
:
(
None
,
(
None
,
'unit.kilojoule_per_mole'
)),
(
"Context"
,
"setPeriodicBoxVectors"
)
:
(
None
,
(
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
)),
(
"Context"
,
"setPositions"
)
:
(
None
,
(
"unit.nanometer"
,)),
(
"Context"
,
"setTime"
)
:
(
None
,
(
"unit.picosecond"
,)),
(
"Context"
,
"setVelocities"
)
:
(
None
,
(
"unit.nanometer/unit.picosecond"
,)),
(
"CMAPTorsionForce"
,
"getMapParameters"
)
:
(
None
,
(
None
,
"unit.kilojoule_per_mole"
)),
(
"CMAPTorsionForce"
,
"setMapParameters"
)
:
(
None
,
(
None
,
None
,
"unit.kilojoule_per_mole"
)),
(
"CMAPTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
()),
(
"CMAPTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
()),
(
"CMMotionRemover"
,
"getFrequency"
)
:
(
None
,
()),
(
"CMMotionRemover"
,
"getFrequency"
)
:
(
None
,
()),
(
"CustomAngleForce"
,
"getNumPerAngleParameters"
)
:
(
None
,
()),
(
"CustomAngleForce"
,
"getNumPerAngleParameters"
)
:
(
None
,
()),
...
@@ -426,68 +437,91 @@ UNITS = {
...
@@ -426,68 +437,91 @@ UNITS = {
(
"CustomTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
()),
(
"CustomTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
()),
(
"CustomCVForce"
,
"getCollectiveVariable"
)
:
(
None
,
()),
(
"CustomCVForce"
,
"getCollectiveVariable"
)
:
(
None
,
()),
(
"CustomCVForce"
,
"getInnerContext"
)
:
(
None
,
()),
(
"CustomCVForce"
,
"getInnerContext"
)
:
(
None
,
()),
(
"DrudeForce"
,
"getParticleParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
'unit.elementary_charge'
,
'unit.nanometer**3'
,
None
,
None
)),
(
"DrudeForce"
,
"addParticle"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
"unit.elementary_charge"
,
"unit.nanometer**3"
,
None
,
None
)),
(
"DrudeForce"
,
"getParticleParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
"unit.elementary_charge"
,
"unit.nanometer**3"
,
None
,
None
)),
(
"DrudeForce"
,
"setParticleParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
None
,
"unit.elementary_charge"
,
"unit.nanometer**3"
,
None
,
None
)),
(
"DrudeForce"
,
"getNumScreenedPairs"
)
:
(
None
,
()),
(
"DrudeForce"
,
"getNumScreenedPairs"
)
:
(
None
,
()),
(
"DrudeForce"
,
"getScreenedPairParameters"
)
:
(
None
,
()),
(
"DrudeForce"
,
"getScreenedPairParameters"
)
:
(
None
,
()),
(
"GBSAOBCForce"
,
"getParticleParameters"
)
(
"GBSAOBCForce"
,
"addParticle"
)
:
(
None
,
(
"unit.elementary_charge"
,
"unit.nanometer"
,
None
)),
:
(
None
,
(
'unit.elementary_charge'
,
(
"GBSAOBCForce"
,
"getParticleParameters"
)
:
(
None
,
(
"unit.elementary_charge"
,
"unit.nanometer"
,
None
)),
'unit.nanometer'
,
None
)),
(
"GBSAOBCForce"
,
"setParticleParameters"
)
:
(
None
,
(
None
,
"unit.elementary_charge"
,
"unit.nanometer"
,
None
)),
(
"GBSAOBCForce"
,
"getSurfaceAreaEnergy"
)
:
(
'unit.kilojoule_per_mole/unit.nanometer/unit.nanometer'
,
()),
(
"GBSAOBCForce"
,
"getSurfaceAreaEnergy"
)
:
(
"unit.kilojoule_per_mole/unit.nanometer/unit.nanometer"
,
()),
(
"HarmonicAngleForce"
,
"getAngleParameters"
)
(
"GBSAOBCForce"
,
"setSurfaceAreaEnergy"
)
:
(
None
,
(
"unit.kilojoule_per_mole/unit.nanometer/unit.nanometer"
,)),
:
(
None
,
(
None
,
None
,
None
,
'unit.radian'
,
(
"HarmonicAngleForce"
,
"addAngle"
)
:
(
None
,
(
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole/(unit.radian*unit.radian)"
)),
'unit.kilojoule_per_mole/(unit.radian*unit.radian)'
)),
(
"HarmonicAngleForce"
,
"getAngleParameters"
)
:
(
None
,
(
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole/(unit.radian*unit.radian)"
)),
(
"HarmonicBondForce"
,
"getBondParameters"
)
(
"HarmonicAngleForce"
,
"setAngleParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole/(unit.radian*unit.radian)"
)),
:
(
None
,
(
None
,
None
,
'unit.nanometer'
,
(
"HarmonicBondForce"
,
"addBond"
)
:
(
None
,
(
None
,
None
,
"unit.nanometer"
,
"unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer)"
)),
'unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer)'
)),
(
"HarmonicBondForce"
,
"getBondParameters"
)
:
(
None
,
(
None
,
None
,
"unit.nanometer"
,
"unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer)"
)),
(
"HarmonicBondForce"
,
"setBondParameters"
)
:
(
None
,
(
None
,
None
,
None
,
"unit.nanometer"
,
"unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer)"
)),
(
"MonteCarloBarostat"
,
"getFrequency"
)
:
(
None
,
()),
(
"MonteCarloBarostat"
,
"getFrequency"
)
:
(
None
,
()),
(
"MonteCarloAnisotropicBarostat"
,
"getFrequency"
)
:
(
None
,
()),
(
"MonteCarloAnisotropicBarostat"
,
"getFrequency"
)
:
(
None
,
()),
(
"NonbondedForce"
,
"getPMEParameters"
)
:
(
None
,
(
'1/unit.nanometer'
,
None
,
None
,
None
)),
(
"NonbondedForce"
,
"getPMEParameters"
)
:
(
None
,
(
"unit.nanometer**-1"
,
None
,
None
,
None
)),
(
"NonbondedForce"
,
"getExceptionParameters"
)
(
"NonbondedForce"
,
"setPMEParameters"
)
:
(
None
,
(
"unit.nanometer**-1"
,
None
,
None
,
None
)),
:
(
None
,
(
None
,
None
,
(
"NonbondedForce"
,
"addException"
)
:
(
None
,
(
None
,
None
,
"unit.elementary_charge*unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
'unit.elementary_charge*unit.elementary_charge'
,
(
"NonbondedForce"
,
"getExceptionParameters"
)
:
(
None
,
(
None
,
None
,
"unit.elementary_charge*unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
'unit.nanometer'
,
'unit.kilojoule_per_mole'
)),
(
"NonbondedForce"
,
"setExceptionParameters"
)
:
(
None
,
(
None
,
None
,
None
,
"unit.elementary_charge*unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
(
"NonbondedForce"
,
"getParticleParameters"
)
(
"NonbondedForce"
,
"addParticle"
)
:
(
None
,
(
"unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
:
(
None
,
(
'unit.elementary_charge'
,
(
"NonbondedForce"
,
"getParticleParameters"
)
:
(
None
,
(
"unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
'unit.nanometer'
,
'unit.kilojoule_per_mole'
)),
(
"NonbondedForce"
,
"setParticleParameters"
)
:
(
None
,
(
None
,
"unit.elementary_charge"
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
)),
(
"PeriodicTorsionForce"
,
"getTorsionParameters"
)
(
"PeriodicTorsionForce"
,
"addTorsion"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole"
)),
:
(
None
,
(
None
,
None
,
None
,
None
,
(
"PeriodicTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole"
)),
None
,
'unit.radian'
,
'unit.kilojoule_per_mole'
)),
(
"PeriodicTorsionForce"
,
"setTorsionParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
None
,
"unit.radian"
,
"unit.kilojoule_per_mole"
)),
(
"GayBerneForce"
,
"getParticleParameters"
)
(
"GayBerneForce"
,
"addParticle"
)
:
(
None
,
(
"unit.nanometer"
,
"unit.kilojoule_per_mole"
,
None
,
None
,
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
,
None
,
None
,
None
)),
:
(
None
,
(
'unit.nanometer'
,
'unit.kilojoule_per_mole'
,
None
,
None
,
'unit.nanometer'
,
'unit.nanometer'
,
'unit.nanometer'
,
None
,
None
,
None
)),
(
"GayBerneForce"
,
"getParticleParameters"
)
:
(
None
,
(
"unit.nanometer"
,
"unit.kilojoule_per_mole"
,
None
,
None
,
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
,
None
,
None
,
None
)),
(
"GayBerneForce"
,
"setParticleParameters"
)
:
(
None
,
(
None
,
"unit.nanometer"
,
"unit.kilojoule_per_mole"
,
None
,
None
,
"unit.nanometer"
,
"unit.nanometer"
,
"unit.nanometer"
,
None
,
None
,
None
)),
(
"Platform"
,
"getDefaultPluginsDirectory"
)
:
(
None
,
()),
(
"Platform"
,
"getDefaultPluginsDirectory"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyDefaultValue"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyDefaultValue"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyNames"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyNames"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyValue"
)
:
(
None
,
()),
(
"Platform"
,
"getPropertyValue"
)
:
(
None
,
()),
(
"Platform"
,
"getSpeed"
)
:
(
None
,
()),
(
"Platform"
,
"getSpeed"
)
:
(
None
,
()),
(
"RBTorsionForce"
,
"getTorsionParameters"
)
(
"RBTorsionForce"
,
"addTorsion"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
)),
:
(
None
,
(
None
,
None
,
None
,
None
,
(
"RBTorsionForce"
,
"getTorsionParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
)),
'unit.kilojoules_per_mole'
,
'unit.kilojoules_per_mole'
,
'unit.kilojoules_per_mole'
,
(
"RBTorsionForce"
,
"setTorsionParameters"
)
:
(
None
,
(
None
,
None
,
None
,
None
,
None
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
,
"unit.kilojoules_per_mole"
)),
'unit.kilojoules_per_mole'
,
'unit.kilojoules_per_mole'
,
'unit.kilojoules_per_mole'
)),
(
"State"
,
"getTime"
)
:
(
"unit.picosecond"
,
()),
(
"State"
,
"getTime"
)
:
(
'unit.picosecond'
,
()),
(
"State"
,
"getKineticEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"State"
,
"getKineticEnergy"
)
:
(
'unit.kilojoules_per_mole'
,
()),
(
"State"
,
"getPotentialEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"State"
,
"getPotentialEnergy"
)
:
(
'unit.kilojoules_per_mole'
,
()),
(
"State"
,
"getPeriodicBoxVolume"
)
:
(
"unit.nanometers**3"
,
()),
(
"State"
,
"getPeriodicBoxVolume"
)
:
(
'unit.nanometers**3'
,
()),
(
"State"
,
"getPeriodicBoxVectors"
)
:
(
"unit.nanometers"
,
()),
(
"State"
,
"getPeriodicBoxVectors"
)
:
(
'unit.nanometers'
,
()),
(
"State"
,
"getParameters"
)
:
(
None
,
()),
(
"State"
,
"getParameters"
)
:
(
None
,
()),
(
"State"
,
"getEnergyParameterDerivatives"
)
:
(
None
,
()),
(
"State"
,
"getEnergyParameterDerivatives"
)
:
(
None
,
()),
(
"System"
,
"getConstraintParameters"
)
:
(
None
,
(
None
,
None
,
'unit.nanometer'
)),
(
"System"
,
"addParticle"
)
:
(
None
,
(
"unit.amu"
,)),
(
"System"
,
"addConstraint"
)
:
(
None
,
(
None
,
None
,
"unit.nanometer"
)),
(
"System"
,
"getConstraintParameters"
)
:
(
None
,
(
None
,
None
,
"unit.nanometer"
)),
(
"System"
,
"setConstraintParameters"
)
:
(
None
,
(
None
,
None
,
None
,
"unit.nanometer"
)),
(
"System"
,
"getForce"
)
:
(
None
,
()),
(
"System"
,
"getForce"
)
:
(
None
,
()),
(
"System"
,
"getVirtualSite"
)
:
(
None
,
()),
(
"System"
,
"getVirtualSite"
)
:
(
None
,
()),
(
"AndersenThemostat"
,
"AndersenThemostat"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
)),
(
"MonteCarloAnisotropicBarostat"
,
"MonteCarloAnisotropicBarostat"
)
:
(
None
,
(
"unit.bar"
,
"unit.kelvin"
,
None
,
None
,
None
,
None
)),
(
"MonteCarloBarostat"
,
"MonteCarloBarostat"
)
:
(
None
,
(
"unit.bar"
,
"unit.kelvin"
,
None
)),
(
"MonteCarloMembraneBarostat"
,
"MonteCarloMembraneBarostat"
)
:
(
None
,
(
"unit.bar"
,
"unit.bar*unit.nanometer"
,
"unit.kelvin"
,
None
,
None
,
None
)),
(
"MonteCarloMembraneBarostat"
,
"getXYMode"
)
:
(
None
,
()),
(
"MonteCarloMembraneBarostat"
,
"getZMode"
)
:
(
None
,
()),
(
"CustomIntegrator"
,
"CustomIntegrator"
)
:
(
None
,
(
"unit.picosecond"
,)),
(
"BrownianIntegrator"
,
"BrownianIntegrator"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.picosecond"
)),
(
"LangevinIntegrator"
,
"LangevinIntegrator"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.picosecond"
)),
(
"LangevinMiddleIntegrator"
,
"LangevinMiddleIntegrator"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.picosecond"
)),
(
"VariableLangevinIntegrator"
,
"VariableLangevinIntegrator"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
None
)),
(
"VerletIntegrator"
,
"VerletIntegrator"
)
:
(
None
,
(
"unit.picosecond"
,)),
(
"DrudeIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeIntegrator"
,
"setDrudeTemperature"
)
:
(
None
,
(
"unit.kelvin"
,)),
(
"DrudeIntegrator"
,
"getMaxDrudeDistance"
)
:
(
"unit.nanometer"
,
()),
(
"DrudeIntegrator"
,
"getMaxDrudeDistance"
)
:
(
"unit.nanometer"
,
()),
(
"DrudeIntegrator"
,
"setMaxDrudeDistance"
)
:
(
None
,
(
"unit.nanometer"
,)),
(
"DrudeLangevinIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeTemperature"
)
:
(
"unit.kelvin"
,
()),
(
"DrudeLangevinIntegrator"
,
"setDrudeTemperature"
)
:
(
None
,
(
"unit.kelvin"
,)),
(
"DrudeLangevinIntegrator"
,
"getMaxDrudeDistance"
)
:
(
"unit.nanometer"
,
()),
(
"DrudeLangevinIntegrator"
,
"getMaxDrudeDistance"
)
:
(
"unit.nanometer"
,
()),
(
"DrudeNoseHooverIntegrator"
,
"getVelocitiesForTemperature"
)
:
(
"unit.nanometers / unit.picosecond"
,
()),
(
"DrudeLangevinIntegrator"
,
"setMaxDrudeDistance"
)
:
(
None
,
(
"unit.nanometer"
,)),
(
"MonteCarloMembraneBarostat"
,
"MonteCarloMembraneBarostat"
)
:
(
None
,
(
"unit.bar"
,
"unit.bar*unit.nanometer"
,
"unit.kelvin"
,
None
,
None
,
None
)),
(
"DrudeNoseHooverIntegrator"
,
"getVelocitiesForTemperature"
)
:
(
"unit.nanometers / unit.picosecond"
,
(
None
,
"unit.kelvin"
,
None
)),
(
"MonteCarloMembraneBarostat"
,
"getXYMode"
)
:
(
None
,
()),
(
"MonteCarloMembraneBarostat"
,
"getZMode"
)
:
(
None
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeFriction"
)
:
(
"unit.picosecond**-1"
,
()),
(
"DrudeLangevinIntegrator"
,
"getDrudeFriction"
)
:
(
"unit.picosecond**-1"
,
()),
(
"DrudeLangevinIntegrator"
,
"setDrudeFriction"
)
:
(
None
,
(
"unit.picosecond**-1"
,)),
(
"DrudeSCFIntegrator"
,
"getMinimizationErrorTolerance"
)
:
(
"unit.kilojoules_per_mole/unit.nanometer"
,
()),
(
"DrudeSCFIntegrator"
,
"getMinimizationErrorTolerance"
)
:
(
"unit.kilojoules_per_mole/unit.nanometer"
,
()),
(
"DrudeSCFIntegrator"
,
"setMinimizationErrorTolerance"
)
:
(
None
,
(
"unit.kilojoules_per_mole/unit.nanometer"
,)),
(
"RPMDIntegrator"
,
"getContractions"
)
:
(
None
,
()),
(
"RPMDIntegrator"
,
"getContractions"
)
:
(
None
,
()),
(
"RPMDIntegrator"
,
"getTotalEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"RPMDIntegrator"
,
"getTotalEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"RPMDIntegrator"
,
"getState"
):
(
None
,(
None
,
None
,
None
,
None
)),
(
"RPMDIntegrator"
,
"getState"
):
(
None
,(
None
,
None
,
None
,
None
)),
(
"RMSDForce"
,
"getReferencePositions"
)
:
(
"unit.nanometer"
,
()),
(
"RMSDForce"
,
"getReferencePositions"
)
:
(
"unit.nanometer"
,
()),
(
"RMSDForce"
,
"setReferencePositions"
)
:
(
None
,
(
"unit.nanometer"
,)),
(
"RMSDForce"
,
"getParticles"
)
:
(
None
,
()),
(
"RMSDForce"
,
"getParticles"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"NoseHooverChain"
)
:
(
None
,
(
"unit.kelvin"
,
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.picosecond**-1"
,
None
,
None
,
None
,
None
,
None
,
None
,
None
)),
(
"NoseHooverChain"
,
"getThermostatedPairs"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"getThermostatedPairs"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"getThermostatedAtoms"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"getThermostatedAtoms"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"getYoshidaSuzukiWeights"
)
:
(
None
,
()),
(
"NoseHooverChain"
,
"getYoshidaSuzukiWeights"
)
:
(
None
,
()),
...
@@ -497,8 +531,7 @@ UNITS = {
...
@@ -497,8 +531,7 @@ UNITS = {
(
"NoseHooverIntegrator"
,
"setRelativeCollisionFrequency"
)
:
(
None
,
(
"unit.picosecond**-1"
,
None
)),
(
"NoseHooverIntegrator"
,
"setRelativeCollisionFrequency"
)
:
(
None
,
(
"unit.picosecond**-1"
,
None
)),
(
"NoseHooverIntegrator"
,
"computeHeatBathEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"NoseHooverIntegrator"
,
"computeHeatBathEnergy"
)
:
(
"unit.kilojoules_per_mole"
,
()),
(
"NoseHooverIntegrator"
,
"addThermostat"
):
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
None
,
None
,
None
)),
(
"NoseHooverIntegrator"
,
"addThermostat"
):
(
None
,
(
"unit.kelvin"
,
"unit.picosecond**-1"
,
None
,
None
,
None
)),
(
"NoseHooverIntegrator"
,
"addSubsystemThermostat"
):
(
"NoseHooverIntegrator"
,
"addSubsystemThermostat"
):
(
None
,
(
None
,
None
,
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.kelvin"
,
"unit.picosecond**-1"
,
None
,
None
,
None
)),
(
None
,
(
None
,
None
,
"unit.kelvin"
,
"unit.picosecond**-1"
,
"unit.kelvin"
,
"unit.picosecond**-1"
,
None
,
None
,
None
)),
(
"NoseHooverIntegrator"
,
"getNumThermostats"
)
:
(
None
,
()),
(
"NoseHooverIntegrator"
,
"getNumThermostats"
)
:
(
None
,
()),
(
"NoseHooverIntegrator"
,
"getThermostat"
)
:
(
None
,
()),
(
"NoseHooverIntegrator"
,
"getThermostat"
)
:
(
None
,
()),
(
"NoseHooverIntegrator"
,
"getMaximumPairDistance"
)
:
(
"unit.nanometer"
,
()),
(
"NoseHooverIntegrator"
,
"getMaximumPairDistance"
)
:
(
"unit.nanometer"
,
()),
...
...
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