Merge pull request #797 from peastman/triclinic

C++ libraries support triclinic boxes

Merge pull request #797 from peastman/triclinic
C++ libraries support triclinic boxes
83ed602e · peastman · b51e05a8 · 050e1262 · 83ed602e · 83ed602e
Commit 83ed602e authored Feb 05, 2015 by peastman
20 changed files
--- a/platforms/reference/src/ReferenceKernels.cpp
+++ b/platforms/reference/src/ReferenceKernels.cpp
--- a/platforms/reference/src/ReferencePlatform.cpp
+++ b/platforms/reference/src/ReferencePlatform.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomGBIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomHbondIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomManyParticleIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceCustomNonbondedIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceForce.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceForce.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceLJCoulombIxn.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceMonteCarloBarostat.cpp
--- a/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
+++ b/platforms/reference/src/SimTKReference/ReferenceNeighborList.cpp
--- a/platforms/reference/src/SimTKReference/ReferencePME.cpp
+++ b/platforms/reference/src/SimTKReference/ReferencePME.cpp
--- a/platforms/reference/src/gbsa/GBVIParameters.cpp
+++ b/platforms/reference/src/gbsa/GBVIParameters.cpp
--- a/platforms/reference/src/gbsa/ObcParameters.cpp
+++ b/platforms/reference/src/gbsa/ObcParameters.cpp
--- a/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp
--- a/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp
+++ b/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp
--- a/platforms/reference/tests/TestReferenceEwald.cpp
+++ b/platforms/reference/tests/TestReferenceEwald.cpp
--- a/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
+++ b/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp
--- a/platforms/reference/tests/TestReferenceNeighborList.cpp
+++ b/platforms/reference/tests/TestReferenceNeighborList.cpp
--- a/platforms/reference/tests/TestReferenceNonbondedForce.cpp
+++ b/platforms/reference/tests/TestReferenceNonbondedForce.cpp
--- a/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp
+++ b/plugins/amoeba/platforms/cuda/src/AmoebaCudaKernels.cpp