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tsoc
openmm
Commits
7d0d0f43
Commit
7d0d0f43
authored
Sep 28, 2015
by
Jason Swails
Browse files
Add tests for VerletIntegrator, VariableVerletIntegrator, LangevinIntegrator,
and VariableLangevinIntegrator
parent
ad98f764
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wrappers/python/tests/TestAPIUnits.py
wrappers/python/tests/TestAPIUnits.py
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wrappers/python/tests/TestAPIUnits.py
View file @
7d0d0f43
...
...
@@ -1041,5 +1041,50 @@ class TestAPIUnits(unittest.TestCase):
self
.
assertEqual
(
damp
,
0.5
)
self
.
assertAlmostEqualUnit
(
polarity
,
1
*
angstrom
**
3
)
def
testVerletIntegrator
(
self
):
""" Tests the VerletIntegrator API features """
integrator
=
VerletIntegrator
(
1.0
)
self
.
assertEqual
(
integrator
.
getStepSize
(),
1.0
*
picosecond
)
self
.
assertEqual
(
integrator
.
getConstraintTolerance
(),
1e-5
)
integrator
.
setConstraintTolerance
(
1e-6
)
self
.
assertEqual
(
integrator
.
getConstraintTolerance
(),
1e-6
)
integrator
=
VerletIntegrator
(
1.0
*
femtoseconds
)
self
.
assertEqual
(
integrator
.
getStepSize
(),
1.0
*
femtoseconds
)
def
testVariableVerletIntegrator
(
self
):
""" Tests the VariableVerletIntegrator API features """
integrator
=
VariableVerletIntegrator
(
0.1
)
self
.
assertEqual
(
integrator
.
getErrorTolerance
(),
0.1
)
integrator
.
setErrorTolerance
(
0.01
)
self
.
assertEqual
(
integrator
.
getErrorTolerance
(),
0.01
)
self
.
assertEqual
(
integrator
.
getConstraintTolerance
(),
1e-5
)
integrator
.
setConstraintTolerance
(
1e-6
)
self
.
assertEqual
(
integrator
.
getConstraintTolerance
(),
1e-6
)
def
testLangevinIntegrator
(
self
):
""" Tests the LangevinIntegrator API features """
integrator
=
LangevinIntegrator
(
300
,
0.1
,
1
)
self
.
assertEqual
(
integrator
.
getTemperature
(),
300
*
kelvin
)
self
.
assertEqual
(
integrator
.
getFriction
(),
0.1
/
picosecond
)
self
.
assertEqual
(
integrator
.
getStepSize
(),
1
*
picosecond
)
integrator
=
LangevinIntegrator
(
300
*
kelvin
,
0.1
/
microsecond
,
1
*
femtosecond
)
self
.
assertEqual
(
integrator
.
getTemperature
(),
300
*
kelvin
)
self
.
assertAlmostEqualUnit
(
integrator
.
getFriction
(),
0.1
/
microsecond
)
self
.
assertEqual
(
integrator
.
getStepSize
(),
1
*
femtosecond
)
def
testVariableLangevinIntegrator
(
self
):
""" Tests the VariableLangevinIntegrator API features """
integrator
=
VariableLangevinIntegrator
(
300
,
0.1
,
0.1
)
self
.
assertEqual
(
integrator
.
getTemperature
(),
300
*
kelvin
)
self
.
assertEqual
(
integrator
.
getFriction
(),
0.1
/
picosecond
)
self
.
assertEqual
(
integrator
.
getErrorTolerance
(),
0.1
)
integrator
=
VariableLangevinIntegrator
(
300
*
kelvin
,
0.1
/
microsecond
,
0.01
)
self
.
assertEqual
(
integrator
.
getTemperature
(),
300
*
kelvin
)
self
.
assertAlmostEqualUnit
(
integrator
.
getFriction
(),
0.1
/
microsecond
)
self
.
assertEqual
(
integrator
.
getErrorTolerance
(),
0.01
)
if
__name__
==
'__main__'
:
unittest
.
main
()
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